Homologs in group_2049

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15355 FBDBKF_15355 77.4 Morganella morganii S1 bamD outer membrane protein assembly factor BamD
EHELCC_10890 EHELCC_10890 77.4 Morganella morganii S2 bamD outer membrane protein assembly factor BamD
NLDBIP_11235 NLDBIP_11235 77.4 Morganella morganii S4 bamD outer membrane protein assembly factor BamD
LHKJJB_11095 LHKJJB_11095 77.4 Morganella morganii S3 bamD outer membrane protein assembly factor BamD
HKOGLL_09705 HKOGLL_09705 77.4 Morganella morganii S5 bamD outer membrane protein assembly factor BamD
F4V73_RS12100 F4V73_RS12100 78.3 Morganella psychrotolerans bamD outer membrane protein assembly factor BamD

Distribution of the homologs in the orthogroup group_2049

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2049

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AC02 8.9e-133 377 73 1 242 1 bamD Outer membrane protein assembly factor BamD Escherichia coli (strain K12)
P0AC03 8.9e-133 377 73 1 242 3 bamD Outer membrane protein assembly factor BamD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AC04 8.9e-133 377 73 1 242 3 bamD Outer membrane protein assembly factor BamD Escherichia coli O157:H7
Q9KU21 1.41e-79 242 50 1 225 3 bamD Outer membrane protein assembly factor BamD Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9L7A6 2.39e-62 199 41 1 245 3 bamD Outer membrane protein assembly factor BamD Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Q9CKA5 6.2e-61 195 43 3 243 3 bamD Outer membrane protein assembly factor BamD Pasteurella multocida (strain Pm70)
P44553 5.64e-60 192 44 1 224 1 bamD Outer membrane protein assembly factor BamD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9K0B1 2.51e-59 191 45 2 228 1 bamD Outer membrane protein assembly factor BamD Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Q9JVB7 4.6e-59 191 43 2 244 3 bamD Outer membrane protein assembly factor BamD Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
Q50985 2.29e-58 189 43 2 244 3 bamD Outer membrane protein assembly factor BamD Neisseria gonorrhoeae
P33641 5.83e-52 174 42 0 209 3 bamD Outer membrane protein assembly factor BamD Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P57482 4.27e-42 146 37 1 208 3 bamD Outer membrane protein assembly factor BamD Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q9PEU0 1.47e-41 146 34 1 229 3 bamD Outer membrane protein assembly factor BamD Xylella fastidiosa (strain 9a5c)
Q87AR6 4.37e-41 145 34 1 229 3 bamD Outer membrane protein assembly factor BamD Xylella fastidiosa (strain Temecula1 / ATCC 700964)
Q8K9E8 3.45e-39 139 33 0 209 3 bamD Outer membrane protein assembly factor BamD Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q9A6U9 5.02e-23 98 27 5 229 3 bamD Outer membrane protein assembly factor BamD Caulobacter vibrioides (strain ATCC 19089 / CIP 103742 / CB 15)
Q98KC1 5.06e-23 97 27 4 237 3 bamD Outer membrane protein assembly factor BamD Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)
Q72B03 1.49e-19 87 30 4 202 3 bamD Outer membrane protein assembly factor BamD Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
Q9ZDY1 2.05e-18 84 25 3 243 3 bamD Outer membrane protein assembly factor BamD Rickettsia prowazekii (strain Madrid E)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01905
Feature type CDS
Gene bamD
Product outer membrane protein assembly factor BamD
Location 447090 - 447824 (strand: -1)
Length 735 (nucleotides) / 244 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2049
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13525 Outer membrane lipoprotein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4105 Cell wall/membrane/envelope biogenesis (M) M Outer membrane protein assembly factor BamD, BamD/ComL family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05807 outer membrane protein assembly factor BamD - -

Protein Sequence

MRRMKYLVAAATVSLLLSGCSSSDKDATADMSPSELYATSQEKLLDGNYGAAIKQLESLDNRYPFGPYSQQVQLDLIYAYYKSAELPMAISAIDRFMRLNPTHPNIDYVLYMRGLTAQALDDSALQGFFGIDRSDRDPQHARVAFKDFSQLVRYYPDSLYTADATKRLVFLKNRLAKYELSVAKFYTKRGAYVAVINRVEQMMRDYPDTEATREALVYMENAYKKLGLTQEADKVASLIAANPA

Flanking regions ( +/- flanking 50bp)

GAGCTTCACGGAGAGACTCCCAAACCTATTCAGAGGATAATCAATACGTGATGAGACGCATGAAATACCTAGTGGCAGCGGCCACTGTAAGCCTGTTACTTTCTGGCTGTTCTAGTTCAGACAAAGACGCAACTGCTGATATGTCTCCTTCTGAGCTTTATGCAACAAGCCAAGAAAAATTGCTAGATGGCAATTATGGAGCGGCTATCAAACAACTGGAGTCTCTCGATAATCGCTATCCTTTTGGTCCTTACTCACAACAAGTTCAGCTTGATCTGATTTATGCTTATTATAAATCAGCTGAGTTACCAATGGCGATTTCCGCTATTGACCGCTTTATGCGATTAAACCCAACCCATCCAAATATTGACTATGTTCTATATATGCGTGGGTTAACCGCTCAGGCATTAGATGATAGTGCATTACAAGGATTCTTTGGTATTGATCGCTCAGACCGTGATCCTCAGCATGCAAGAGTGGCTTTCAAAGACTTTAGCCAGTTAGTTCGCTACTATCCTGATAGCCTCTACACAGCAGATGCCACAAAGCGTCTTGTTTTTCTTAAAAACCGTTTAGCGAAATATGAACTCTCTGTTGCGAAATTCTATACCAAACGAGGGGCTTATGTCGCGGTTATTAATCGAGTTGAACAAATGATGCGTGATTATCCAGATACCGAAGCTACACGTGAAGCGCTTGTGTATATGGAAAATGCCTACAAAAAACTAGGCTTAACTCAAGAAGCAGATAAAGTTGCCTCACTGATTGCAGCCAACCCTGCTTAAACATTTTTACTATCAAAAACAGCAGCCTAGCGCTGCTGTTTTTTTATGCT