COG4105
Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected COG entry COG4105
Protein list: lists the 7 occurences of the COG entry within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the COG entry of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entry has been clustered.
Orthogroups are shown in red if they are annotated with that particular COG entry in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and COG entry prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entry.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entry prediction.
Description
Description |
Outer membrane protein assembly factor BamD, BamD/ComL family |
Function(s) descr. |
Cell wall/membrane/envelope biogenesis (M) |
Occurence in the database
COG4105 is associated with 7 different
proteins
|
The 7 proteins are classified into 1 different orthogroup(s)
|
|
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_2089 |
FBDBKF_15355 |
79108 |
79881 |
-1 |
bamD |
outer membrane protein assembly factor BamD |
Morganella morganii S1 |
1 |
group_2089 |
EHELCC_10890 |
5025 |
5798 |
1 |
bamD |
outer membrane protein assembly factor BamD |
Morganella morganii S2 |
2 |
group_2089 |
NLDBIP_11235 |
5025 |
5798 |
1 |
bamD |
outer membrane protein assembly factor BamD |
Morganella morganii S4 |
3 |
group_2089 |
LHKJJB_11095 |
5025 |
5798 |
1 |
bamD |
outer membrane protein assembly factor BamD |
Morganella morganii S3 |
4 |
group_2089 |
HKOGLL_09705 |
5025 |
5798 |
1 |
bamD |
outer membrane protein assembly factor BamD |
Morganella morganii S5 |
5 |
group_2089 |
F4V73_RS12100 |
5141 |
5866 |
1 |
bamD |
outer membrane protein assembly factor BamD |
Morganella psychrotolerans |
6 |
group_2089 |
PMI_RS01905 |
447090 |
447824 |
-1 |
bamD |
outer membrane protein assembly factor BamD |
Proteus mirabilis HI4320 |