COG4105


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4105, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Outer membrane protein assembly factor BamD, BamD/ComL family
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG4105 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2049 FBDBKF_15355 79108 79881 -1 bamD outer membrane protein assembly factor BamD Morganella morganii S1
1 group_2049 EHELCC_10890 5025 5798 1 bamD outer membrane protein assembly factor BamD Morganella morganii S2
2 group_2049 NLDBIP_11235 5025 5798 1 bamD outer membrane protein assembly factor BamD Morganella morganii S4
3 group_2049 LHKJJB_11095 5025 5798 1 bamD outer membrane protein assembly factor BamD Morganella morganii S3
4 group_2049 HKOGLL_09705 5025 5798 1 bamD outer membrane protein assembly factor BamD Morganella morganii S5
5 group_2049 F4V73_RS12100 5141 5866 1 bamD outer membrane protein assembly factor BamD Morganella psychrotolerans
6 group_2049 PMI_RS01905 447090 447824 -1 bamD outer membrane protein assembly factor BamD Proteus mirabilis HI4320