COG4105


Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected COG entry COG4105
Protein list: lists the 7 occurences of the COG entry within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the COG entry of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entry has been clustered.
Orthogroups are shown in red if they are annotated with that particular COG entry in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and COG entry prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entry.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entry prediction.

Description

Description Outer membrane protein assembly factor BamD, BamD/ComL family
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG4105 is associated with 7 different proteins
The 7 proteins are classified into 1 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2089 FBDBKF_15355 79108 79881 -1 bamD outer membrane protein assembly factor BamD Morganella morganii S1
1 group_2089 EHELCC_10890 5025 5798 1 bamD outer membrane protein assembly factor BamD Morganella morganii S2
2 group_2089 NLDBIP_11235 5025 5798 1 bamD outer membrane protein assembly factor BamD Morganella morganii S4
3 group_2089 LHKJJB_11095 5025 5798 1 bamD outer membrane protein assembly factor BamD Morganella morganii S3
4 group_2089 HKOGLL_09705 5025 5798 1 bamD outer membrane protein assembly factor BamD Morganella morganii S5
5 group_2089 F4V73_RS12100 5141 5866 1 bamD outer membrane protein assembly factor BamD Morganella psychrotolerans
6 group_2089 PMI_RS01905 447090 447824 -1 bamD outer membrane protein assembly factor BamD Proteus mirabilis HI4320