Homologs in group_2012

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15120 FBDBKF_15120 75.7 Morganella morganii S1 yafJ putative glutamine amidotransferase YafJ
EHELCC_11125 EHELCC_11125 75.7 Morganella morganii S2 yafJ putative glutamine amidotransferase YafJ
NLDBIP_11470 NLDBIP_11470 75.7 Morganella morganii S4 yafJ putative glutamine amidotransferase YafJ
LHKJJB_11330 LHKJJB_11330 75.7 Morganella morganii S3 yafJ putative glutamine amidotransferase YafJ
HKOGLL_09940 HKOGLL_09940 75.7 Morganella morganii S5 yafJ putative glutamine amidotransferase YafJ
F4V73_RS12325 F4V73_RS12325 76.9 Morganella psychrotolerans - class II glutamine amidotransferase

Distribution of the homologs in the orthogroup group_2012

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2012

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q47147 7.54e-147 413 74 0 255 1 yafJ Putative glutamine amidotransferase YafJ Escherichia coli (strain K12)
P44098 2.95e-89 269 49 1 254 4 HI_1037 Putative glutamine amidotransferase HI_1037 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q58910 2.17e-47 163 37 5 255 3 MJ1515 Uncharacterized protein MJ1515 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9KG45 0.000831 43 29 4 125 3 glmS Glutamine--fructose-6-phosphate aminotransferase [isomerizing] Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01675
Feature type CDS
Gene -
Product class II glutamine amidotransferase
Location 399918 - 400685 (strand: 1)
Length 768 (nucleotides) / 255 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2012
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13230 Glutamine amidotransferases class-II

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0121 General function prediction only (R) R Predicted glutamine amidotransferase YafJ

Protein Sequence

MCELLGMSANVPTDINFSLSGLIPRGGKTGPHKDGWGITFYEGLGCRTFKDPQASAVSPVARFVQEYPIKSHAVIAHIRQANRGNVSLENTHPFTRELWGKNWTYAHNGQLKGYQSLDTGRFRAVGQTDSEKAFCWILNQLEKRYQRTPSNWPAVFRFIAILADQLRQKGVFNMLLSDGRFVMAYCSTNLHWITRKAPFGKAKLLDQDIEIDFQQHTKADDIVSVISTLPLTGNESWQKIPVGEFVLFDRGLRIL

Flanking regions ( +/- flanking 50bp)

TAATATTGCCTTATATGAATAATTAAAGTGTGAGTAAGTAGGAGCGGGCGATGTGTGAATTGTTGGGCATGAGTGCAAATGTACCCACTGATATCAATTTTAGTTTAAGTGGCCTCATTCCTCGTGGTGGTAAAACTGGCCCTCATAAAGACGGCTGGGGTATCACCTTTTATGAAGGATTAGGATGTCGTACATTTAAAGATCCACAAGCTAGTGCCGTTTCACCCGTCGCTCGTTTTGTACAAGAATACCCCATTAAATCACATGCTGTCATTGCGCATATTCGCCAAGCTAATCGAGGTAATGTCAGTTTAGAAAATACGCATCCTTTTACCCGTGAACTGTGGGGTAAAAATTGGACTTATGCTCATAATGGACAACTTAAAGGTTATCAATCACTGGATACAGGGCGTTTTAGAGCGGTAGGACAGACTGATAGTGAAAAAGCCTTTTGCTGGATATTAAATCAGCTTGAAAAGCGTTACCAGAGAACACCATCTAATTGGCCGGCGGTCTTTCGTTTCATTGCTATTTTAGCTGATCAATTGCGACAAAAAGGTGTGTTTAATATGTTGTTATCCGATGGCCGGTTTGTTATGGCATATTGTTCAACTAATTTACACTGGATAACCCGTAAAGCTCCTTTTGGTAAGGCCAAATTGCTGGATCAAGATATTGAAATTGATTTTCAGCAACACACTAAAGCGGATGATATTGTGTCGGTAATATCGACATTACCCTTAACAGGTAATGAATCTTGGCAAAAAATTCCTGTTGGTGAGTTTGTTTTATTTGATCGTGGGTTGCGAATTTTGTAACCATTTACTATCGATACTTTTAGCTAAATTTAATGTGGAAATAGCCTCAC