Homologs in group_2008

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15085 FBDBKF_15085 55.2 Morganella morganii S1 lysR DNA-binding transcriptional regulator, LysR family
EHELCC_11160 EHELCC_11160 55.2 Morganella morganii S2 lysR DNA-binding transcriptional regulator, LysR family
NLDBIP_11505 NLDBIP_11505 55.2 Morganella morganii S4 lysR DNA-binding transcriptional regulator, LysR family
LHKJJB_11365 LHKJJB_11365 55.2 Morganella morganii S3 lysR DNA-binding transcriptional regulator, LysR family
HKOGLL_09975 HKOGLL_09975 55.2 Morganella morganii S5 lysR DNA-binding transcriptional regulator, LysR family
F4V73_RS12365 F4V73_RS12365 57.2 Morganella psychrotolerans - LysR family transcriptional regulator

Distribution of the homologs in the orthogroup group_2008

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2008

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q0TD46 3.63e-42 150 30 2 288 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli O6:K15:H31 (strain 536 / UPEC)
P45463 4.13e-42 150 30 2 288 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli (strain K12)
Q1R6S1 6.37e-42 150 30 2 288 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli (strain UTI89 / UPEC)
Q8FDH0 6.37e-42 150 30 2 288 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8XBK9 8.58e-42 149 30 2 288 3 ttdR HTH-type transcriptional activator TtdR Escherichia coli O157:H7
P52689 4e-40 145 29 2 283 3 ltrA Probable HTH-type transcriptional regulator LtrA Klebsiella pneumoniae
P76250 2.43e-38 140 28 3 297 1 dmlR HTH-type transcriptional regulator DmlR Escherichia coli (strain K12)
P37641 5.98e-38 139 30 2 293 3 yhjC Uncharacterized HTH-type transcriptional regulator YhjC Escherichia coli (strain K12)
P67662 8.48e-38 139 29 3 295 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli (strain K12)
P67663 8.48e-38 139 29 3 295 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P67664 8.48e-38 139 29 3 295 3 aaeR HTH-type transcriptional activator AaeR Escherichia coli O157:H7
P30864 4.17e-37 137 32 6 291 3 yafC Uncharacterized HTH-type transcriptional regulator YafC Escherichia coli (strain K12)
A0A0H2ZDG9 5.86e-35 132 27 2 299 3 PA14_22550 HTH-type transcriptional repressor PA14_22550 Pseudomonas aeruginosa (strain UCBPP-PA14)
P75836 7.54e-32 123 26 3 283 3 ycaN Uncharacterized HTH-type transcriptional regulator YcaN Escherichia coli (strain K12)
Q9JPU9 1.47e-30 119 32 6 290 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup C (strain 8013)
P43011 1.83e-30 119 26 1 281 3 HI_1364 Uncharacterized HTH-type transcriptional regulator HI_1364 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9JXW7 2.22e-28 114 31 6 290 1 crgA HTH-type transcriptional regulator CrgA Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Q01610 1.48e-27 112 28 3 282 3 PA2220 Putative transcriptional regulator Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P72131 3.33e-26 108 30 3 295 1 ptxR HTH-type transcriptional regulator PtxR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P77333 5.47e-22 96 24 2 282 1 pgrR HTH-type transcriptional regulator PgrR Escherichia coli (strain K12)
P37459 2.29e-11 67 23 5 295 3 sinR Probable HTH-type transcriptional regulator SinR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P37682 2.31e-11 67 22 5 294 3 yiaU Uncharacterized HTH-type transcriptional regulator YiaU Escherichia coli (strain K12)
P46068 5.1e-11 65 23 2 261 2 dsdC HTH-type transcriptional regulator DsdC Escherichia coli (strain K12)
P77744 1.08e-10 64 28 1 135 3 abgR HTH-type transcriptional regulator AbgR Escherichia coli (strain K12)
O34685 5.77e-10 62 32 4 137 1 yofA HTH-type transcriptional regulator YofA Bacillus subtilis (strain 168)
O35038 7.34e-10 62 27 2 144 3 ytlI HTH-type transcriptional regulator YtlI Bacillus subtilis (strain 168)
P55576 8.54e-10 62 25 5 250 3 NGR_a02420 Uncharacterized HTH-type transcriptional regulator y4mQ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
P0ACR8 8.85e-10 62 31 0 118 3 yfeR Uncharacterized HTH-type transcriptional regulator YfeR Shigella flexneri
P0ACR7 8.85e-10 62 31 0 118 3 yfeR Uncharacterized HTH-type transcriptional regulator YfeR Escherichia coli (strain K12)
P0C6D1 9.65e-10 62 23 6 293 3 irgB Iron-regulated virulence regulatory protein IrgB Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P45099 9.74e-10 62 26 8 270 3 gcvA Glycine cleavage system transcriptional activator homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A5F9F9 1.1e-09 62 23 6 293 3 irgB Iron-regulated virulence regulatory protein IrgB Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
P0ACR4 1.5e-09 61 27 3 143 1 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli (strain K12)
P0ACR5 1.5e-09 61 27 3 143 3 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ACR6 1.5e-09 61 27 3 143 3 yeiE Uncharacterized HTH-type transcriptional regulator YeiE Escherichia coli O157:H7
P67668 2.42e-09 60 34 0 104 3 BQ2027_MB2303C Uncharacterized HTH-type transcriptional regulator Mb2303c Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WMF3 2.42e-09 60 34 0 104 1 Rv2282c Uncharacterized HTH-type transcriptional regulator Rv2282c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMF2 2.42e-09 60 34 0 104 3 MT2340 Uncharacterized HTH-type transcriptional regulator MT2340 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P14145 5.61e-09 59 24 7 271 3 ampR HTH-type transcriptional activator AmpR Rhodobacter capsulatus
P52696 1.02e-08 58 24 4 199 3 ybhD Uncharacterized HTH-type transcriptional regulator YbhD Escherichia coli (strain K12)
P75684 4.51e-08 54 26 1 107 3 yagP Putative LysR family substrate binding domain-containing protein YagP Escherichia coli (strain K12)
P70785 1.4e-07 55 26 3 180 3 ttuA HTH-type transcriptional regulator TtuA Agrobacterium vitis
O68014 2.67e-07 54 29 2 134 1 benM HTH-type transcriptional regulator BenM Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
P0A9F6 6.29e-07 53 23 5 253 1 gcvA Glycine cleavage system transcriptional activator Escherichia coli (strain K12)
P0A9F7 6.29e-07 53 23 5 253 3 gcvA Glycine cleavage system transcriptional activator Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9F8 6.29e-07 53 23 5 253 3 gcvA Glycine cleavage system transcriptional activator Escherichia coli O157:H7
P07774 7.69e-07 53 29 3 144 1 catM HTH-type transcriptional regulator CatM Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
O33945 8.99e-07 53 26 4 169 3 None Probable cat1 operon transcriptional activator Acinetobacter lwoffii
P52660 9.28e-07 53 24 8 256 3 blaA HTH-type transcriptional regulator BlaA Proteus vulgaris
Q85G62 1.32e-06 52 27 3 158 3 rbcR Probable RuBisCO transcriptional regulator Cyanidioschyzon merolae (strain NIES-3377 / 10D)
P52686 1.6e-06 52 24 0 129 3 sdsB SDS degradation transcriptional activation protein Pseudomonas sp. (strain ATCC 19151)
Q55459 2.8e-06 51 23 8 296 1 cmpR HTH-type transcriptional activator CmpR Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P52669 3.04e-06 51 26 3 162 3 ttuA HTH-type transcriptional regulator TtuA Agrobacterium vitis
A7Z5E4 3.44e-06 51 27 2 125 3 yofA HTH-type transcriptional regulator YofA Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / LMG 26770 / FZB42)
P27111 3.92e-06 51 26 5 173 1 cynR HTH-type transcriptional regulator CynR Escherichia coli (strain K12)
P24734 6.75e-06 50 24 6 239 1 ampR HTH-type transcriptional activator AmpR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O33812 1.02e-05 49 24 4 161 3 None Uncharacterized HTH-type transcriptional regulator in lacR 5'region (Fragment) Staphylococcus xylosus
P94501 1.24e-05 49 28 1 123 1 gltR HTH-type transcriptional regulator GltR Bacillus subtilis (strain 168)
Q44311 1.97e-05 48 24 5 195 3 soxR HTH-type transcriptional regulator SoxR Arthrobacter sp. (strain TE1826)
A2CI69 2.39e-05 48 26 1 138 3 rbcR Probable RuBisCO transcriptional regulator Chlorokybus atmophyticus
P77171 3.48e-05 48 24 0 114 3 ydcI Uncharacterized HTH-type transcriptional regulator YdcI Escherichia coli (strain K12)
P0ACR0 4.35e-05 48 30 0 96 1 allS HTH-type transcriptional activator AllS Escherichia coli (strain K12)
P0ACR1 4.35e-05 48 30 0 96 3 allS HTH-type transcriptional activator AllS Escherichia coli O157:H7
Q8X4M5 4.78e-05 47 25 5 171 3 cynR HTH-type transcriptional regulator CynR Escherichia coli O157:H7
Q57083 5.64e-05 47 23 10 297 1 perR HTH-type transcriptional regulator PerR Escherichia coli (strain K12)
Q8KA72 5.94e-05 47 25 13 263 3 metR HTH-type transcriptional regulator MetR Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P0ACQ9 6.44e-05 47 25 3 145 3 tdcA HTH-type transcriptional regulator TdcA Shigella flexneri
P0ACQ7 6.44e-05 47 25 3 145 3 tdcA HTH-type transcriptional regulator TdcA Escherichia coli (strain K12)
P0ACQ8 6.44e-05 47 25 3 145 3 tdcA HTH-type transcriptional regulator TdcA Escherichia coli O157:H7
Q57748 6.86e-05 47 23 10 301 3 MJ0300 Uncharacterized HTH-type transcriptional regulator MJ0300 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q6B936 7.05e-05 47 26 0 119 3 rbcR Probable RuBisCO transcriptional regulator Gracilaria tenuistipitata var. liui
P52678 8.27e-05 47 25 3 155 3 oxyR Probable hydrogen peroxide-inducible genes activator Mycobacterium leprae (strain TN)
Q8FK66 8.42e-05 47 30 0 96 3 allS HTH-type transcriptional activator AllS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TKD7 8.42e-05 47 30 0 96 3 allS HTH-type transcriptional activator AllS Escherichia coli O6:K15:H31 (strain 536 / UPEC)
P77559 8.8e-05 47 24 7 244 3 ynfL Uncharacterized HTH-type transcriptional regulator YnfL Escherichia coli (strain K12)
Q9I6Z9 9.9e-05 47 29 0 99 3 bauR HTH-type transcriptional activator BauR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q1XDT2 0.00012 46 26 0 119 3 rbcR Probable RuBisCO transcriptional regulator Neopyropia yezoensis
P42722 0.000123 46 23 11 266 3 cfxR HTH-type transcriptional regulator CfxR Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P52665 0.000123 45 26 3 128 3 budR HTH-type transcriptional regulator BudR (Fragment) Klebsiella aerogenes
P51205 0.000133 46 26 0 119 3 rbcR Probable RuBisCO transcriptional regulator Porphyra purpurea
Q1RF30 0.000135 46 30 0 96 3 allS HTH-type transcriptional activator AllS Escherichia coli (strain UTI89 / UPEC)
A1A8H0 0.000135 46 30 0 96 3 allS HTH-type transcriptional activator AllS Escherichia coli O1:K1 / APEC
P52595 0.000184 46 23 9 297 3 cbbR HTH-type transcriptional regulator CbbR Rhodospirillum rubrum
O19892 0.000186 46 26 0 119 3 rbcR Probable RuBisCO transcriptional regulator Cyanidium caldarium
O06703 0.000247 45 24 2 153 3 bbuR HTH-type transcriptional regulator BbuR Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
Q9HWH8 0.000254 45 26 4 142 3 nmoR HTH-type transcriptional regulator NmoR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P45349 0.000307 45 23 8 252 3 metR HTH-type transcriptional regulator MetR Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P52666 0.000328 45 25 3 139 3 budR HTH-type transcriptional regulator BudR Raoultella terrigena
P0A4T7 0.000387 45 23 0 113 3 pcaQ HTH-type transcriptional regulator PcaQ Rhizobium radiobacter
P0A4T6 0.000387 45 23 0 113 3 pcaQ HTH-type transcriptional regulator PcaQ Agrobacterium fabrum (strain C58 / ATCC 33970)
P33634 0.000463 44 24 9 255 3 yfiE Uncharacterized HTH-type transcriptional regulator YfiE Escherichia coli (strain K12)
P39592 0.000502 44 21 0 116 3 ywbI Uncharacterized HTH-type transcriptional regulator YwbI Bacillus subtilis (strain 168)
Q9S4Y7 0.000531 44 33 0 72 3 allS HTH-type transcriptional activator AllS Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PCH2 0.000531 44 33 0 72 3 allS HTH-type transcriptional activator AllS Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q57S50 0.000544 44 33 0 72 3 allS HTH-type transcriptional activator AllS Salmonella choleraesuis (strain SC-B67)
P77700 0.000595 44 32 0 93 1 yahB Uncharacterized HTH-type transcriptional regulator YahB Escherichia coli (strain K12)
Q47141 0.000625 44 35 0 68 1 hcaR Hca operon transcriptional activator HcaR Escherichia coli (strain K12)
O32255 0.000663 44 27 2 131 3 yvbU Uncharacterized HTH-type transcriptional regulator YvbU Bacillus subtilis (strain 168)
Q00678 0.000758 44 25 7 165 3 nocR Regulatory protein NocR Agrobacterium fabrum (strain C58 / ATCC 33970)
P64562 0.000797 40 38 0 60 5 yqfE Putative protein YqfE Escherichia coli (strain K12)
P64563 0.000797 40 38 0 60 4 yqfE Uncharacterized protein YqfE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P35112 0.001 43 25 7 165 3 nocR Regulatory protein NocR Agrobacterium tumefaciens (strain T37)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01650
Feature type CDS
Gene -
Product LysR family transcriptional regulator
Location 393284 - 394204 (strand: 1)
Length 921 (nucleotides) / 306 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2008
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00126 Bacterial regulatory helix-turn-helix protein, lysR family
PF03466 LysR substrate binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0583 Transcription (K) K DNA-binding transcriptional regulator, LysR family

Protein Sequence

MDKIKASEVFVTIVKQGSMIKAADYLGMSRAMVTRYLNEMEEWAGVRLLHRTTRKQSLTSVGELVYQQSLQLLEMAERIPANIPKESHQISGLVRITTAQSLANCALSVAITEFIQLYPLIAVDLQISNQTVNLIEERIDIALRITNHLEPNLIARPLAKCFSVVCAHKDYLAKHGIPNTPDDLTYHQCLTYRFFGSSLWEFSLGDERYSVPVGGNLSANESVVLLQATLQGAGVSLQPYCSAKPYLERGELEILLADYQPQPMGIYAVLASRQNMPAAVRVLLDFLVDWFASSPHWLSLSGERVS

Flanking regions ( +/- flanking 50bp)

GAAAAACCCTGTTTTGGTGAATACATTGTTGCATAAATCGAGCAAATAATATGGACAAAATTAAAGCATCAGAGGTTTTTGTGACCATCGTTAAGCAAGGTAGCATGATTAAAGCTGCTGATTATCTAGGTATGTCTAGAGCAATGGTGACGCGCTATCTTAATGAAATGGAGGAGTGGGCTGGGGTGCGTTTGTTGCATAGAACAACCCGTAAGCAGAGTCTGACTTCCGTGGGAGAATTAGTTTATCAACAAAGTTTACAACTGCTAGAGATGGCGGAGCGTATTCCCGCGAATATTCCCAAAGAGAGTCACCAAATCAGTGGGCTGGTGCGTATTACAACGGCACAATCACTCGCTAATTGTGCATTATCTGTGGCTATAACTGAATTTATACAACTTTATCCTCTTATTGCAGTCGATTTGCAAATATCTAATCAGACAGTCAATCTTATTGAAGAGCGTATTGATATTGCATTGCGTATTACCAACCATTTAGAGCCTAATCTGATAGCCCGCCCTTTAGCAAAATGTTTTTCTGTGGTTTGTGCTCATAAAGATTATTTAGCTAAACATGGTATCCCTAACACGCCGGATGATTTGACTTATCATCAATGTCTCACATATCGCTTTTTTGGCAGTAGCTTATGGGAGTTTAGTTTAGGTGATGAGCGTTATTCTGTTCCTGTAGGTGGTAATTTAAGTGCCAATGAGTCTGTTGTGTTATTGCAAGCCACTTTGCAAGGTGCCGGAGTCTCCTTACAACCTTACTGCTCAGCAAAACCCTATCTTGAACGGGGTGAGTTAGAAATTTTGTTAGCGGATTATCAGCCACAGCCTATGGGAATTTATGCCGTGTTAGCGAGCCGACAAAATATGCCCGCAGCCGTGCGTGTTTTACTGGATTTTCTGGTTGACTGGTTTGCTTCTTCGCCTCATTGGTTGTCATTATCGGGTGAACGCGTGAGTTAATTGTTTTGGATAATTGGCTAAAGTGGTTTTCATCACATCAATAAAATAGC