Homologs in group_4299

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0 homologs were identified in 0 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product

Distribution of the homologs in the orthogroup group_4299

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_4299

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P55707 5.74e-136 396 50 2 377 4 NGR_a00740 Uncharacterized protein y4xO Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q8T882 8.04e-31 124 27 11 370 1 tadh Tauropine dehydrogenase Arabella iricolor
Q8N0N9 1.48e-25 110 27 14 385 2 tadh Opine dehydrogenase Haliotis discus hannai
Q8N0P0 1.01e-22 102 24 10 364 2 odh Octopine dehydrogenase Mizuhopecten yessoensis
Q9BHM6 5.22e-21 97 24 11 357 1 odh1 Octopine dehydrogenase Pecten maximus

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS01145
Feature type CDS
Gene -
Product NAD/NADP-dependent octopine/nopaline dehydrogenase family protein
Location 282033 - 283190 (strand: 1)
Length 1158 (nucleotides) / 385 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_4299
Orthogroup size 1
N. genomes 1

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Genomic region

Domains

PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0240 Energy production and conversion (C) C Glycerol-3-phosphate dehydrogenase

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG044287 NAD/NADP-dependent octopine/nopaline dehydrogenase family protein VF1252 Nutritional/Metabolic factor

Protein Sequence

MIPNEKLRVTLCGAGRTGHLAAILFSLNPAIDVTLYSSRSEAVTAYKENDHQLQAVMPDGQVIKTRSVRMTEAIDEACSEADIIIITTPSHVRESLLQRMAPILPKHKNIFVGAIPGFAGFDWLAEKTLGDASNIVIWGMKDVPHIAFDLQPGKSVRMGGGKSQLYVAVHRREKPQYANLLLNYLKQLYDSPITLLTDYLEITLTPGNPIMHSSVIYGLIGPWGQWHNRPFESIPCWWNDCPELGAYFLARCDRENQALCNKAEVVLGINLSSVQPLQQEIVAAYADSIADPRTLLSVLRTNKAYQGIPLPLISTAQSHGYIFDKQHRVFQEDIAYGLALLVALGERLRVPTPYIREIYDWCCGYMGGNLPHPQIPMDWPIIRVK

Flanking regions ( +/- flanking 50bp)

GAACAACTTGATAATTGGTTTTCTTTGCCAACTTGTTTGGGGGATAGCAGATGATCCCAAATGAGAAATTGAGAGTAACACTATGTGGAGCCGGTCGTACAGGGCATCTTGCGGCAATTTTATTTAGCTTAAATCCTGCGATTGACGTCACTCTTTACAGCAGTCGCTCAGAAGCTGTGACAGCATATAAAGAAAATGATCATCAACTTCAGGCGGTGATGCCTGATGGTCAAGTTATTAAAACCCGCTCGGTTAGGATGACAGAAGCCATTGATGAGGCGTGCTCTGAGGCAGATATCATCATTATTACGACACCAAGTCATGTACGTGAAAGTTTACTTCAACGTATGGCGCCAATACTGCCGAAACATAAAAACATCTTTGTGGGCGCCATTCCCGGTTTTGCTGGCTTTGACTGGCTGGCTGAAAAAACGTTAGGTGATGCATCCAATATTGTTATATGGGGAATGAAAGATGTTCCCCATATTGCATTTGATCTGCAACCGGGAAAAAGTGTCAGAATGGGGGGCGGAAAATCACAACTCTATGTAGCTGTGCATAGAAGAGAAAAACCGCAATATGCCAATCTTCTTCTCAATTACCTCAAACAACTTTATGACTCACCTATTACGCTACTGACCGATTATCTAGAAATTACCCTAACGCCAGGAAATCCTATTATGCACAGCTCTGTTATCTATGGCCTTATCGGTCCATGGGGACAGTGGCACAATAGGCCTTTTGAGAGCATTCCATGTTGGTGGAACGATTGCCCTGAGTTGGGTGCCTATTTTCTTGCCCGCTGTGATAGGGAGAATCAAGCGTTATGTAATAAAGCAGAAGTTGTATTGGGGATTAATCTCAGTTCCGTGCAACCATTACAGCAGGAAATAGTAGCCGCATATGCGGACTCAATTGCTGATCCGCGAACATTACTCAGTGTGTTACGAACGAATAAGGCCTATCAGGGTATTCCTTTACCTCTTATTTCTACAGCACAATCCCATGGTTATATTTTTGACAAACAACATCGAGTTTTTCAGGAAGACATTGCCTATGGACTAGCGCTTCTTGTTGCTCTTGGGGAACGTCTTCGAGTACCAACACCCTATATAAGAGAAATATATGATTGGTGTTGTGGTTATATGGGAGGAAATCTGCCTCACCCTCAGATCCCAATGGATTGGCCAATAATAAGGGTGAAATAGTATGCGTGTTACCGGCAGTGTCATTTTTATTGTCCAGTTTTTATTTATCG