Homologs in group_2932

Help

5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14395 FBDBKF_14395 84.7 Morganella morganii S1 dsdX D-serine transporter DsdX
EHELCC_07885 EHELCC_07885 84.7 Morganella morganii S2 dsdX D-serine transporter DsdX
NLDBIP_08210 NLDBIP_08210 84.7 Morganella morganii S4 dsdX D-serine transporter DsdX
LHKJJB_06055 LHKJJB_06055 84.7 Morganella morganii S3 dsdX D-serine transporter DsdX
HKOGLL_04860 HKOGLL_04860 84.7 Morganella morganii S5 dsdX D-serine transporter DsdX

Distribution of the homologs in the orthogroup group_2932

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2932

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P08555 0.0 719 79 0 445 1 dsdX D-serine transporter DsdX Escherichia coli (strain K12)
A0A0H2VAP9 0.0 716 79 0 445 1 dsdX D-serine transporter DsdX Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q9Z670 2.72e-88 279 37 5 439 3 gntP Gluconate permease Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
Q9ZIJ1 3.91e-87 276 38 3 452 3 gnuT Gluconate permease Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P12012 1.3e-84 269 37 6 452 3 gntP Gluconate permease Bacillus subtilis (strain 168)
P39835 7.09e-81 259 35 4 439 1 gntT High-affinity gluconate transporter Escherichia coli (strain K12)
P39344 8.11e-79 254 34 6 441 1 idnT Gnt-II system L-idonate transporter Escherichia coli (strain K12)
P46832 1.34e-78 254 35 7 437 3 gntP Gluconate permease Bacillus licheniformis
O31862 5.99e-78 252 34 4 429 3 yojA Uncharacterized permease YojA Bacillus subtilis (strain 168)
P39357 2.78e-63 214 32 5 422 3 yjhF Uncharacterized permease YjhF Escherichia coli (strain K12)
P0AC94 3.8e-63 213 31 5 439 1 gntP High-affinity gluconate transporter Escherichia coli (strain K12)
P0AC95 3.8e-63 213 31 5 439 3 gntP High-affinity gluconate transporter Escherichia coli O157:H7
P0AC96 7.99e-59 202 33 6 426 1 gntU Low-affinity gluconate transporter Escherichia coli (strain K12)
P0AC97 7.99e-59 202 33 6 426 3 gntU Low-affinity gluconate transporter Escherichia coli O157:H7
P71364 2.57e-52 186 30 9 442 3 HI_1015 Uncharacterized permease HI_1015 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q46892 1.02e-41 156 28 5 430 1 ygbN Inner membrane permease YgbN Escherichia coli (strain K12)
P0A3F7 3.09e-34 125 79 0 72 5 dsdX Putative D-serine transporter DsdX-like protein Shigella flexneri
P0A3F6 3.09e-34 125 79 0 72 5 dsdX Putative D-serine transporter DsdX-like protein Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00895
Feature type CDS
Gene dsdX
Product D-serine transporter DsdX
Location 220180 - 221517 (strand: 1)
Length 1338 (nucleotides) / 445 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2932
Orthogroup size 6
N. genomes 6

Actions

Genomic region

Domains

PF02447 GntP family permease

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2610 Carbohydrate transport and metabolism (G) G H+/gluconate symporter GntT or related permease, GntP/DsdX family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K13629 D-serine transporter - -

Protein Sequence

MEPTLWVLGTLIISILLIVFTIIKLKFHPFLALLLASFFVGMAMKMNPLEMVSAIENGIGGTLGFLAAIIGLGTILGKMMEISGAAERIGITLQKCRWLSPDVIMVLVGLICGITLFVEVGVVLLIPLAFSIAKKTNTSLLKLAIPLCTALMAVHCIVPPHPAALFVTNELGADMGTVIVAGLAVGLLASLVGGPLFLKVLGERLPFKTVPEAFSDMEIRQEKDLPSLGATLFTVLLPIVLMLIKTAAELNMEKGTSVYIALQFIGNPITAMFIAAFVAYYILGIRRNMGMSTLLKKTEDSFSSIANILLIIGAGGAFNGILKGSGLSDSLAVILSNLDMHPILLAWLVAIILHAAVGSATVAMMGATAIVAPLMPMYPDISPEIITLAIGSGAIGCTIVTDSLFWLVKQYCNATLSETFRFYSIATFIASFVALGGTFMLSFVI

Flanking regions ( +/- flanking 50bp)

TGATTAATATTCAATATGTTTAACAATAAATAAAAATTAGGGATTGATCTATGGAACCGACACTATGGGTACTAGGTACTCTGATTATAAGTATCTTGCTCATTGTTTTTACTATAATAAAACTTAAGTTTCATCCATTTTTAGCACTACTACTTGCCAGTTTTTTTGTCGGTATGGCAATGAAAATGAACCCATTAGAAATGGTCAGTGCAATTGAAAATGGGATTGGGGGAACGCTGGGATTTTTAGCCGCCATTATTGGTTTGGGTACTATTCTCGGTAAAATGATGGAAATATCGGGGGCGGCAGAGCGCATCGGTATCACCTTACAAAAATGCCGTTGGTTATCACCGGATGTTATTATGGTATTGGTGGGACTGATTTGTGGTATTACCCTGTTTGTTGAAGTAGGGGTAGTGCTACTTATTCCATTAGCATTCTCTATTGCTAAAAAAACAAACACCTCATTATTAAAACTCGCCATCCCTTTATGTACTGCATTAATGGCCGTGCATTGTATTGTTCCTCCACACCCTGCAGCGCTTTTTGTCACTAATGAGTTAGGGGCCGATATGGGAACGGTGATCGTTGCCGGTCTTGCTGTTGGATTATTAGCCTCATTAGTAGGCGGGCCTCTTTTCTTAAAAGTATTGGGTGAGCGCTTACCTTTTAAAACCGTACCAGAAGCATTTTCTGATATGGAAATTCGTCAAGAAAAAGATTTACCTTCACTTGGGGCGACATTATTTACGGTTTTATTACCTATTGTTCTGATGCTGATTAAGACCGCCGCAGAGCTTAATATGGAAAAAGGCACTTCGGTTTATATTGCATTACAATTTATTGGTAACCCGATTACTGCAATGTTTATTGCTGCTTTTGTTGCTTACTATATTTTAGGTATTCGCCGTAATATGGGCATGAGTACCCTATTGAAAAAAACAGAAGATAGTTTTAGCTCTATTGCCAATATTTTGTTAATTATTGGTGCTGGGGGCGCATTTAACGGCATTTTAAAAGGGAGTGGTTTAAGCGATTCATTGGCGGTGATCCTCTCTAATTTGGATATGCATCCTATTTTATTAGCTTGGCTAGTAGCGATTATTCTGCATGCAGCAGTAGGATCAGCAACGGTTGCTATGATGGGTGCGACCGCTATCGTTGCACCATTAATGCCAATGTATCCAGATATTAGCCCTGAAATTATTACATTGGCAATTGGCTCTGGGGCTATTGGCTGTACGATTGTCACTGACTCCCTATTTTGGTTAGTAAAACAGTATTGTAATGCCACATTAAGCGAAACTTTCCGTTTTTATAGTATCGCGACCTTTATTGCTTCATTTGTGGCATTAGGGGGCACTTTTATGCTTTCTTTTGTCATATAAAAGAGAATGACGATGACCACGATAGATATAAATAAATTAAAAAATGATTA