COG2610


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2610, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 19 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description H+/gluconate symporter GntT or related permease, GntP/DsdX family
Function(s) descr. Carbohydrate transport and metabolism (G)

Occurence in the database

COG2610 is associated with 19 different proteins (see tab "Protein list" and "Profile")
The 19 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2610 FBDBKF_03495 104711 105979 -1 gntT H+/gluconate symporter GntT or related permease, GntP/DsdX family Morganella morganii S1
1 group_1446 FBDBKF_09195 69017 70354 -1 gntU gluconate transporter Morganella morganii S1
2 group_2932 FBDBKF_14395 80222 81559 -1 dsdX D-serine transporter DsdX Morganella morganii S1
3 group_2610 EHELCC_07040 141124 142392 1 gntT H+/gluconate symporter GntT or related permease, GntP/DsdX family Morganella morganii S2
4 group_2932 EHELCC_07885 35426 36763 1 dsdX D-serine transporter DsdX Morganella morganii S2
5 group_1446 EHELCC_10215 75750 77087 1 gntU gluconate transporter Morganella morganii S2
6 group_2610 NLDBIP_07365 140997 142265 1 gntT H+/gluconate symporter GntT or related permease, GntP/DsdX family Morganella morganii S4
7 group_2932 NLDBIP_08210 35426 36763 1 dsdX D-serine transporter DsdX Morganella morganii S4
8 group_1446 NLDBIP_10560 54021 55358 1 gntU gluconate transporter Morganella morganii S4
9 group_2932 LHKJJB_06055 220396 221733 -1 dsdX D-serine transporter DsdX Morganella morganii S3
10 group_2610 LHKJJB_06900 104743 106011 1 gntT H+/gluconate symporter GntT or related permease, GntP/DsdX family Morganella morganii S3
11 group_1446 LHKJJB_10795 136170 137507 -1 gntU gluconate transporter Morganella morganii S3
12 group_2610 HKOGLL_04030 127376 128644 -1 gntT H+/gluconate symporter GntT or related permease, GntP/DsdX family Morganella morganii S5
13 group_2932 HKOGLL_04860 20017 21354 1 dsdX D-serine transporter DsdX Morganella morganii S5
14 group_1446 HKOGLL_13855 69471 70808 -1 gntU gluconate transporter Morganella morganii S5
15 group_1446 F4V73_RS10775 285942 287279 1 gntU gluconate transporter Morganella psychrotolerans
16 group_2610 F4V73_RS11400 422066 423331 1 SLC13 family permease Morganella psychrotolerans
17 group_2932 PMI_RS00895 220180 221517 1 dsdX D-serine transporter DsdX Proteus mirabilis HI4320
18 group_1446 PMI_RS13165 2922936 2924273 -1 gntU gluconate transporter Proteus mirabilis HI4320