Homologs in group_1303

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07970 FBDBKF_07970 85.9 Morganella morganii S1 yadH ABC-type multidrug transport system, permease component
EHELCC_13800 EHELCC_13800 85.9 Morganella morganii S2 yadH ABC-type multidrug transport system, permease component
NLDBIP_14245 NLDBIP_14245 85.9 Morganella morganii S4 yadH ABC-type multidrug transport system, permease component
LHKJJB_08605 LHKJJB_08605 85.9 Morganella morganii S3 yadH ABC-type multidrug transport system, permease component
HKOGLL_08155 HKOGLL_08155 85.9 Morganella morganii S5 yadH ABC-type multidrug transport system, permease component
F4V73_RS13015 F4V73_RS13015 85.9 Morganella psychrotolerans - ABC transporter permease

Distribution of the homologs in the orthogroup group_1303

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1303

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFN9 3.41e-145 409 76 0 256 3 yadH Inner membrane transport permease YadH Shigella flexneri
P0AFN6 3.41e-145 409 76 0 256 1 yadH Inner membrane transport permease YadH Escherichia coli (strain K12)
P0AFN7 3.41e-145 409 76 0 256 3 yadH Inner membrane transport permease YadH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFN8 3.41e-145 409 76 0 256 3 yadH Inner membrane transport permease YadH Escherichia coli O157:H7
P50333 3.62e-12 67 21 2 248 3 nodJ Nodulation protein J Neorhizobium galegae
P06755 1.31e-10 63 21 4 251 3 nodJ Nodulation protein J Rhizobium leguminosarum bv. viciae
O52619 1.47e-09 60 19 2 246 3 nodJ Nodulation protein J Rhizobium meliloti (strain 1021)
P72336 9.2e-07 52 18 4 238 3 nodJ Nodulation protein J Rhizobium sp. (strain N33)
P26025 5.85e-06 49 20 3 191 3 nodJ Nodulation protein J Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00790
Feature type CDS
Gene -
Product ABC transporter permease
Location 200484 - 201254 (strand: 1)
Length 771 (nucleotides) / 256 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1303
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01061 ABC-2 type transporter

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0842 Defense mechanisms (V) V ABC-type multidrug transport system, permease component

Protein Sequence

MIQLYWVALKTIWIKEVTRFGRIWVQTLIPPVITMSLYFVIFGNLIGKRIGDMGGVDYMQFIVPGLIMMAVITNSYANVSSSFFGAKFQRSIEELLVSPVPTHVVIAGFVGGGVARGICVGILVTLVSLFFVPLEIHSWTMVVVTLLMTSIVFSLAGLLNAIFAKTFDDISIIPTFVLTPLTYLGGVFYSLSLLPAFWQGVSKLNPIVYMISGFRYGFLGITDVSLTVTITVLCLFIAVFYIVAWYLIEKGRGLRS

Flanking regions ( +/- flanking 50bp)

GTGCATTTAGTTAATGAAGATCATACAGAAACAGAAAAAGGAGAGAGGGAATGATTCAGTTGTATTGGGTAGCCCTCAAGACGATTTGGATTAAAGAAGTGACCCGTTTTGGCCGTATCTGGGTACAAACTTTAATTCCTCCTGTTATCACGATGTCGCTCTATTTTGTTATTTTCGGTAACTTAATTGGTAAGCGTATTGGTGATATGGGCGGTGTTGATTATATGCAGTTTATTGTTCCCGGCTTGATTATGATGGCGGTGATCACAAACTCATATGCTAATGTCTCCTCTTCATTTTTTGGCGCTAAATTCCAACGTAGTATTGAAGAATTATTAGTATCGCCAGTACCGACCCATGTTGTTATTGCCGGATTTGTGGGGGGTGGTGTCGCCCGTGGTATTTGTGTTGGGATATTGGTCACTCTGGTTTCACTATTTTTTGTACCACTAGAGATACACTCTTGGACAATGGTTGTGGTGACATTATTAATGACCTCGATTGTTTTTTCTCTCGCAGGATTGTTGAATGCCATTTTTGCGAAAACCTTTGATGATATTAGTATTATCCCCACCTTTGTTTTAACGCCATTAACTTATTTAGGTGGTGTGTTTTATTCACTCTCCCTATTACCTGCATTTTGGCAAGGTGTTTCTAAATTAAACCCGATTGTTTATATGATAAGCGGTTTCCGTTATGGTTTTTTAGGGATCACTGATGTGTCATTAACGGTGACAATCACGGTACTATGCCTGTTTATTGCCGTGTTTTATATCGTAGCCTGGTACTTAATTGAAAAAGGTCGCGGTTTAAGAAGCTAATCTACAAATTAGTGTTTAAGGTAATAAAAATTAAAATCGGTGTCTGCAAC