Homologs in group_1303

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07970 FBDBKF_07970 96.5 Morganella morganii S1 yadH ABC-type multidrug transport system, permease component
EHELCC_13800 EHELCC_13800 96.5 Morganella morganii S2 yadH ABC-type multidrug transport system, permease component
NLDBIP_14245 NLDBIP_14245 96.5 Morganella morganii S4 yadH ABC-type multidrug transport system, permease component
LHKJJB_08605 LHKJJB_08605 96.5 Morganella morganii S3 yadH ABC-type multidrug transport system, permease component
HKOGLL_08155 HKOGLL_08155 96.5 Morganella morganii S5 yadH ABC-type multidrug transport system, permease component
PMI_RS00790 PMI_RS00790 85.9 Proteus mirabilis HI4320 - ABC transporter permease

Distribution of the homologs in the orthogroup group_1303

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1303

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFN9 3.06e-146 412 77 0 256 3 yadH Inner membrane transport permease YadH Shigella flexneri
P0AFN6 3.06e-146 412 77 0 256 1 yadH Inner membrane transport permease YadH Escherichia coli (strain K12)
P0AFN7 3.06e-146 412 77 0 256 3 yadH Inner membrane transport permease YadH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFN8 3.06e-146 412 77 0 256 3 yadH Inner membrane transport permease YadH Escherichia coli O157:H7
P06755 3.37e-12 67 20 2 248 3 nodJ Nodulation protein J Rhizobium leguminosarum bv. viciae
P50333 8.2e-11 63 20 2 248 3 nodJ Nodulation protein J Neorhizobium galegae
O52619 1.82e-10 63 22 4 249 3 nodJ Nodulation protein J Rhizobium meliloti (strain 1021)
P72336 7.31e-08 55 19 2 240 3 nodJ Nodulation protein J Rhizobium sp. (strain N33)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS13015
Feature type CDS
Gene -
Product ABC transporter permease
Location 217275 - 218045 (strand: -1)
Length 771 (nucleotides) / 256 (amino acids)

Contig

Accession term accessions NZ_VXKB01000003 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 425895 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1303
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01061 ABC-2 type transporter

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0842 Defense mechanisms (V) V ABC-type multidrug transport system, permease component

Protein Sequence

MMSLYWVALKTIWRKEITRFMRIWVQTLIPPVITMSLYFIIFGNLIGNRIGEMGGVGYMQFIVPGLIMMSVITNSYANVSSSFFGAKFQKSIEELLVAPVPTHVIIAGFVGGGVARGVLVGILVTLISLFFVPLHIHSWFMIVTTLLMTSILFSLAGLLNALFAKSFDDISIIPTFVLTPLTYLGGVFYSLTLLPAFWQAVSKLNPIVYMISGFRYGFLGISDVSVATTLSVLSLFIAVFYILTWRLIEKGRGLRT

Flanking regions ( +/- flanking 50bp)

CTGGAAGAATTATTTGTGCATCTGGTTAATCACGATGCGGAGGCTGAAAAATGATGTCGTTGTACTGGGTGGCGCTGAAAACAATCTGGCGCAAAGAGATCACCCGCTTTATGCGGATTTGGGTACAGACACTGATCCCGCCGGTGATCACTATGTCACTCTATTTTATTATCTTCGGGAACCTGATAGGTAACCGGATTGGTGAAATGGGCGGCGTGGGATACATGCAGTTTATCGTGCCCGGACTTATCATGATGTCAGTGATAACCAACTCTTATGCCAATGTGTCGTCTTCCTTTTTTGGTGCGAAATTTCAGAAAAGTATTGAAGAACTGCTGGTCGCCCCGGTGCCGACTCACGTCATTATTGCCGGGTTTGTCGGTGGCGGCGTGGCGCGTGGTGTGCTGGTTGGCATACTGGTCACGCTTATCTCCCTGTTTTTTGTACCGTTACACATCCATTCGTGGTTTATGATTGTTACCACACTGCTGATGACCTCGATCCTTTTCTCGCTGGCGGGGCTGCTCAATGCACTGTTTGCGAAAAGCTTTGATGACATCAGTATTATTCCGACTTTTGTCCTGACGCCGCTGACCTATCTGGGGGGCGTATTTTACTCCCTGACACTGTTACCGGCATTCTGGCAGGCGGTTTCCAAACTCAACCCGATTGTGTATATGATTAGCGGCTTCCGTTATGGTTTCTTAGGTATCAGTGATGTTTCTGTGGCGACAACACTCAGCGTTCTGAGTCTGTTTATCGCGGTATTTTATATCCTGACCTGGCGCCTGATAGAGAAAGGACGCGGTCTGAGAACCTGATCCTGAATCACTCCTCTGATAAAAACCCGGCAAAACAATCGCCGGGTTTT