Homologs in group_2256

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17380 FBDBKF_17380 69.7 Morganella morganii S1 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
EHELCC_17275 EHELCC_17275 69.7 Morganella morganii S2 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
NLDBIP_17920 NLDBIP_17920 69.7 Morganella morganii S4 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
LHKJJB_17840 LHKJJB_17840 69.7 Morganella morganii S3 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
HKOGLL_17850 HKOGLL_17850 69.7 Morganella morganii S5 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
F4V73_RS16555 F4V73_RS16555 69.6 Morganella psychrotolerans ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD

Distribution of the homologs in the orthogroup group_2256

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2256

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P25539 5.83e-180 507 66 2 365 1 ribD Riboflavin biosynthesis protein RibD Escherichia coli (strain K12)
P44326 1.83e-141 410 53 2 370 3 ribD Riboflavin biosynthesis protein RibD Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q89AB0 2.06e-123 363 47 2 366 3 ribD Riboflavin biosynthesis protein RibD Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P17618 3.33e-92 284 40 3 369 1 ribD Riboflavin biosynthesis protein RibD Bacillus subtilis (strain 168)
P70814 4.49e-89 276 41 5 374 3 ribD Riboflavin biosynthesis protein RibD Bacillus amyloliquefaciens
O66534 7.93e-86 267 41 7 372 3 ribD Riboflavin biosynthesis protein RibD Aquifex aeolicus (strain VF5)
P50853 2.13e-85 267 41 4 367 3 ribD Riboflavin biosynthesis protein RibD Actinobacillus pleuropneumoniae
Q9Z735 1.28e-78 249 40 5 363 3 ribD Riboflavin biosynthesis protein RibD Chlamydia pneumoniae
O84735 5.57e-71 229 37 7 367 3 ribD Riboflavin biosynthesis protein RibD Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
Q9PLJ6 2.67e-68 223 37 5 366 3 ribD Riboflavin biosynthesis protein RibD Chlamydia muridarum (strain MoPn / Nigg)
P9WPH1 7.53e-65 213 37 11 368 1 ribD Riboflavin biosynthesis protein RibD Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WPH0 7.53e-65 213 37 11 368 3 ribD Riboflavin biosynthesis protein RibD Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q8K9A4 1.74e-63 202 62 0 145 3 ribD1 Diaminohydroxyphosphoribosylamino-pyrimidine deaminase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q55158 4.41e-63 209 36 6 365 3 ribD Riboflavin biosynthesis protein RibD Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P57533 1.03e-61 198 62 0 146 3 ribD1 Diaminohydroxyphosphoribosylamino-pyrimidine deaminase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K9A3 4.36e-61 199 43 1 214 3 ribD2 5-amino-6-(5-phosphoribosylamino)uracil reductase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q8GWP5 2.31e-51 180 53 0 159 1 PYRD Riboflavin biosynthesis protein PYRD, chloroplastic Arabidopsis thaliana
B6TRH4 1.41e-49 174 53 0 158 2 PYRD Riboflavin biosynthesis protein PYRD, chloroplastic Zea mays
P57534 6.87e-48 164 41 1 207 3 ribD2 5-amino-6-(5-phosphoribosylamino)uracil reductase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
O24750 8.83e-43 155 36 9 332 3 ribD Riboflavin biosynthesis protein RibD Corynebacterium ammoniagenes
Q9STY4 1.59e-33 134 27 12 411 1 PYRR Riboflavin biosynthesis protein PYRR, chloroplastic Arabidopsis thaliana
K7WIZ6 3.78e-31 128 27 10 388 1 PYRR Riboflavin biosynthesis protein PYRR, chloroplastic Zea mays
O26337 3.81e-17 82 28 4 220 1 MTH_235 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q58085 4.16e-17 82 27 5 231 1 arfC 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O28272 1.52e-14 75 28 2 190 3 AF_2007 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
P68397 4.1e-11 64 33 7 170 3 tadA tRNA-specific adenosine deaminase Shigella flexneri
P68398 4.1e-11 64 33 7 170 1 tadA tRNA-specific adenosine deaminase Escherichia coli (strain K12)
Q8FF24 4.69e-11 64 33 7 170 3 tadA tRNA-specific adenosine deaminase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8XA44 4.69e-11 64 33 7 170 3 tadA tRNA-specific adenosine deaminase Escherichia coli O157:H7
Q6BII9 6.29e-10 62 26 5 213 3 RIB7 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968)
P44931 9.74e-10 60 32 7 159 3 tadA tRNA-specific adenosine deaminase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P87241 1.6e-09 62 33 4 139 3 rib2 Diaminohydroxyphosphoribosylamino-pyrimidine deaminase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P95872 2.13e-09 60 22 3 184 3 SSO2097 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Q757H6 1.13e-08 58 28 6 194 3 RIB7 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
Q8K9R4 7.28e-08 54 31 6 130 3 tadA tRNA-specific adenosine deaminase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q6FU96 1.29e-07 55 25 6 206 1 RIB7 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138)
Q9P4B8 1.82e-07 55 27 10 209 3 RIB7 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Kluyveromyces marxianus
P33312 2.69e-07 54 28 5 194 1 RIB7 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q6CJ61 1.05e-06 53 26 6 200 3 RIB7 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
Q89AM8 1.23e-06 51 30 8 155 3 tadA tRNA-specific adenosine deaminase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P21335 1.53e-06 51 29 5 154 1 tadA tRNA-specific adenosine deaminase Bacillus subtilis (strain 168)
P57343 1.04e-05 48 26 7 165 3 tadA tRNA-specific adenosine deaminase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q1RGK7 1.12e-05 48 27 7 152 3 tadA tRNA-specific adenosine deaminase Rickettsia bellii (strain RML369-C)
Q99W51 1.95e-05 47 27 5 156 1 tadA tRNA-specific adenosine deaminase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5RC69 2.16e-05 48 27 6 147 2 DCTD Deoxycytidylate deaminase Pongo abelii
P32321 2.46e-05 48 27 6 147 1 DCTD Deoxycytidylate deaminase Homo sapiens
Q5M9G0 3.98e-05 47 30 6 129 2 Dctd Deoxycytidylate deaminase Rattus norvegicus
Q8K2D6 3.98e-05 47 30 6 129 2 Dctd Deoxycytidylate deaminase Mus musculus
Q72IF6 0.000112 47 33 4 124 3 tilS tRNA(Ile)-lysidine synthase Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)
Q5SI38 0.000118 47 33 4 124 3 tilS tRNA(Ile)-lysidine synthase Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q92G39 0.000241 44 28 3 104 3 tadA tRNA-specific adenosine deaminase Rickettsia conorii (strain ATCC VR-613 / Malish 7)
O66747 0.000479 44 23 5 192 1 ribD2 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase Aquifex aeolicus (strain VF5)
P00814 0.000706 43 45 2 51 1 CD Deoxycytidylate deaminase Enterobacteria phage T2
P16006 0.000817 43 45 2 51 1 CD Deoxycytidylate deaminase Enterobacteria phage T4
P78594 0.000818 43 33 3 77 3 FCA1 Cytosine deaminase Candida albicans (strain SC5314 / ATCC MYA-2876)
A9CK16 0.000852 43 27 4 130 1 tadA tRNA-specific adenosine deaminase Agrobacterium fabrum (strain C58 / ATCC 33970)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00390
Feature type CDS
Gene ribD
Product bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
Location 109413 - 110570 (strand: 1)
Length 1158 (nucleotides) / 385 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2256
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region
PF01872 RibD C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0117 Coenzyme transport and metabolism (H) H Riboflavin biosynthesis protein RibD, pyrimidine deaminase domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11752 diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193] Riboflavin metabolism
Metabolic pathways
Biosynthesis of secondary metabolites
Biosynthesis of cofactors
Quorum sensing		 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD

Protein Sequence

MMTINNSNNLTGNEPANDETYMRRAIELAALGRFTTSPNPNVGCVIVKEGKIIGEGYHHHAGGPHAEVNALNMAGENAKGATVYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLVAAGIDVSHGVLMQEAEKLNIGFFKRMRTGFPYIQLKLAASLDGKTALASGESQWITSNASRQDVQNFRAQASAILTTSATVLADDPAMNVRWEALSDEIKAIYPLESLRQPIRIITDSQNRVTPDYKITQLAGECLLARTHSQQEAWQGDVSEILLPTNGKNSSVDLVLLMMQLGKRNINSVWVESGAHFAGALLELGLVDELIIYIAPKILGNDARGLLSISPLSSLSEAPEFTIDSLQQIGPDIRVCLKPRY

Flanking regions ( +/- flanking 50bp)

GCTTCACACCTTCACACGACTATTTGAAAATAACGATAAATAATAAATCTATGATGACAATTAACAACAGCAACAATCTTACGGGCAATGAGCCGGCTAATGATGAAACCTATATGCGTCGAGCGATAGAGTTAGCTGCATTAGGACGTTTTACAACATCACCTAACCCAAATGTGGGATGCGTGATTGTGAAAGAAGGGAAGATTATAGGTGAAGGTTATCACCATCATGCAGGTGGTCCACATGCCGAAGTGAATGCATTAAATATGGCGGGTGAAAATGCCAAAGGTGCTACTGTCTATGTTACGCTTGAGCCATGTAGCCACTTTGGTAAAACGCCTCCTTGTGCTGATGCTTTAATCAACGCCGGGGTAAAACGTGTTGTTGCTGCAATGCAAGATCCCAATCCTCAAGTGGCAGGACGTGGTTTACATAAATTAGTCGCTGCAGGTATTGATGTTTCTCATGGCGTATTAATGCAAGAAGCTGAAAAATTGAATATCGGCTTTTTTAAACGTATGAGAACAGGGTTTCCTTATATCCAATTAAAACTGGCCGCCTCTTTAGACGGTAAAACGGCATTAGCATCAGGGGAAAGTCAATGGATAACCTCTAACGCTTCGCGACAAGATGTGCAAAACTTTCGCGCGCAAGCTAGTGCTATTTTAACAACGAGTGCCACTGTTTTAGCCGATGATCCTGCAATGAATGTGCGTTGGGAAGCATTATCCGATGAGATAAAAGCGATTTATCCACTAGAGTCATTGCGCCAGCCTATTCGCATTATTACCGATAGCCAAAATAGGGTAACTCCCGACTATAAAATTACACAACTTGCAGGTGAGTGCTTGCTTGCTCGGACTCACTCTCAGCAAGAAGCTTGGCAAGGTGATGTCTCAGAAATTTTGCTTCCTACTAATGGCAAAAATAGTAGTGTCGATTTAGTGTTATTAATGATGCAGTTAGGTAAACGCAATATTAATAGTGTATGGGTTGAGAGTGGCGCACATTTTGCTGGCGCACTATTAGAGCTTGGTCTTGTTGATGAGCTTATCATTTATATTGCTCCGAAAATTTTAGGCAATGATGCTCGAGGTTTATTATCCATTTCACCACTGTCGTCATTATCTGAAGCTCCTGAATTTACAATAGATTCTCTTCAACAAATCGGCCCTGATATCCGCGTTTGTTTAAAACCTCGTTATTAATAGATGCAAATATGTGTGTCTATGGCGCTATTTGTAGTAAAATAGCGCCG