Homologs in group_2404

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19270 FBDBKF_19270 73.8 Morganella morganii S1 hybA hydrogenase 2 operon protein HybA
EHELCC_07555 EHELCC_07555 73.8 Morganella morganii S2 hybA hydrogenase 2 operon protein HybA
NLDBIP_07880 NLDBIP_07880 73.8 Morganella morganii S4 hybA hydrogenase 2 operon protein HybA
LHKJJB_07415 LHKJJB_07415 73.8 Morganella morganii S3 hybA hydrogenase 2 operon protein HybA
HKOGLL_03515 HKOGLL_03515 73.8 Morganella morganii S5 hybA hydrogenase 2 operon protein HybA
F4V73_RS12030 F4V73_RS12030 72.6 Morganella psychrotolerans hybA hydrogenase 2 operon protein HybA

Distribution of the homologs in the orthogroup group_2404

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2404

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAK0 0.0 518 73 2 337 3 hybA Hydrogenase-2 operon protein HybA Shigella flexneri
P0AAJ8 0.0 518 73 2 337 3 hybA Hydrogenase-2 operon protein HybA Escherichia coli (strain K12)
P0AAJ9 0.0 518 73 2 337 3 hybA Hydrogenase-2 operon protein HybA Escherichia coli O157:H7
P33389 9.07e-43 154 33 13 340 4 DVU_0535 Protein DVU_0535 Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
P0AAJ7 1.29e-33 129 31 12 311 3 fdoH Formate dehydrogenase-O iron-sulfur subunit Shigella flexneri
P0AAJ5 1.29e-33 129 31 12 311 1 fdoH Formate dehydrogenase-O iron-sulfur subunit Escherichia coli (strain K12)
P0AAJ6 1.29e-33 129 31 12 311 3 fdoH Formate dehydrogenase-O iron-sulfur subunit Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AAJ4 1.47e-33 128 29 10 307 3 fdnH Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit Shigella flexneri
P0AAJ3 1.47e-33 128 29 10 307 1 fdnH Formate dehydrogenase, nitrate-inducible, iron-sulfur subunit Escherichia coli (strain K12)
P44450 2.45e-31 123 30 11 303 3 fdxH Formate dehydrogenase iron-sulfur subunit Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AAK9 9.2e-29 114 31 8 251 3 nrfC Protein NrfC Shigella flexneri
P0AAK7 9.2e-29 114 31 8 251 3 nrfC Protein NrfC Escherichia coli (strain K12)
P0AAK8 9.2e-29 114 31 8 251 3 nrfC Protein NrfC Escherichia coli O157:H7
P45015 1.4e-27 110 31 8 228 3 nrfC Protein NrfC homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8X616 1.21e-21 94 30 7 212 3 ydhX Uncharacterized ferredoxin-like protein YdhX Escherichia coli O157:H7
P77375 1.71e-21 94 29 8 233 2 ydhX Uncharacterized ferredoxin-like protein YdhX Escherichia coli (strain K12)
P31076 6.25e-21 92 32 7 191 4 psrB Polysulfide reductase chain B Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
P0A1I1 1.24e-20 91 30 8 214 1 phsB Thiosulfate reductase electron transfer subunit PhsB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1I2 1.24e-20 91 30 8 214 3 phsB Thiosulfate reductase electron transfer subunit PhsB Salmonella typhi
Q72E85 1.44e-19 89 31 5 206 1 qrcC Menaquinone reductase, iron-sulfur cluster-binding subunit Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
P0AAJ1 2.56e-19 87 30 8 205 3 ynfG Probable anaerobic dimethyl sulfoxide reductase chain YnfG Escherichia coli (strain K12)
P0AAJ2 2.56e-19 87 30 8 205 3 ynfG Probable anaerobic dimethyl sulfoxide reductase chain YnfG Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
D3RNN7 5.27e-19 87 31 7 205 1 soeB Sulfite dehydrogenase subunit B Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D)
P18776 1.8e-18 85 30 8 205 1 dmsB Anaerobic dimethyl sulfoxide reductase chain B Escherichia coli (strain K12)
Q83RZ7 1.95e-18 85 30 8 205 3 dmsB Anaerobic dimethyl sulfoxide reductase chain B Shigella flexneri
Q9HR73 4.15e-18 85 32 9 205 2 dmsB Putative dimethyl sulfoxide reductase iron-sulfur subunit B Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
Q727P4 1.96e-17 83 28 13 241 1 DVU_2811 Formate dehydrogenase 2 subunit beta (cytochrome c-553) Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough)
Q7CQM9 3.11e-16 80 33 6 173 1 ttrB Tetrathionate reductase subunit B Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P45003 3.11e-16 79 31 7 179 3 dmsB Anaerobic dimethyl sulfoxide reductase chain B Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O30080 6.89e-13 70 39 5 117 3 ttrB Tetrathionate reductase subunit B Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q7WTT9 8.21e-13 70 26 6 224 1 arrB Arsenate respiratory reductase iron-sulfur subunit ArrB Shewanella sp. (strain ANA-3)
Q8GC87 2.31e-11 65 26 7 195 1 fdhB Formate dehydrogenase subunit beta Megalodesulfovibrio gigas (strain ATCC 19364 / DSM 1382 / NCIMB 9332 / VKM B-1759)
P27273 2.56e-11 65 24 7 209 1 fdhB1 Formate dehydrogenase iron-sulfur subunit Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / CCUG 13145 / JCM 31913 / LMG 7466 / NCTC 11488 / FDC 602W)
Q8L3A9 3.42e-11 67 27 6 181 1 padI NADH-dependent phenylglyoxylate dehydrogenase subunit beta Aromatoleum evansii
P60069 7.93e-11 65 33 3 115 1 clrB Chlorate reductase subunit beta Ideonella dechloratans
Q83RN5 6.1e-10 63 28 7 191 3 narH Respiratory nitrate reductase 1 beta chain Shigella flexneri
O29751 6.19e-10 62 33 4 130 1 hmeA Hdr-like menaquinol oxidoreductase iron-sulfur subunit 1 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
P11349 6.44e-10 63 28 7 191 1 narH Respiratory nitrate reductase 1 beta chain Escherichia coli (strain K12)
Q47CW7 1.29e-09 62 35 3 96 1 pcrB Perchlorate reductase subunit beta Dechloromonas aromatica (strain RCB)
Q46819 1.42e-09 59 33 4 109 4 ygfS Putative electron transport protein YgfS Escherichia coli (strain K12)
P19318 1.59e-09 62 34 3 99 1 narY Respiratory nitrate reductase 2 beta chain Escherichia coli (strain K12)
I3R9M8 2.8e-09 61 31 6 160 1 narH Respiratory nitrate reductase subunit beta Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4)
Q9S1G9 4.53e-09 60 24 8 225 1 serB Selenate reductase subunit beta Thauera selenatis
P0AAK4 5.47e-09 58 33 5 124 3 hydN Electron transport protein HydN Escherichia coli (strain K12)
P0AAK5 5.47e-09 58 33 5 124 3 hydN Electron transport protein HydN Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AAK6 5.47e-09 58 33 5 124 3 hydN Electron transport protein HydN Escherichia coli O157:H7
P42176 7.03e-09 60 35 2 91 3 narH Nitrate reductase beta chain Bacillus subtilis (strain 168)
Q8GPG3 9.51e-09 59 31 4 110 1 ddhB Dimethylsulfide dehydrogenase subunit beta Rhodovulum sulfidophilum
Q46820 1.66e-08 59 30 5 123 2 uacF Putative oxidoreductase UacF Escherichia coli (strain K12)
P56256 1.74e-08 56 28 8 171 4 ysaA Putative electron transport protein YsaA Escherichia coli (strain K12)
Q57713 2.81e-08 56 31 5 137 3 MJ0265 Uncharacterized ferredoxin MJ0265 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P20925 9.31e-08 54 32 4 126 4 None Frd operon probable iron-sulfur subunit A (Fragment) Proteus vulgaris
P0AAK3 5.41e-07 53 22 7 218 3 hycB Formate hydrogenlyase subunit 2 Shigella flexneri
P0AAK1 5.41e-07 53 22 7 218 1 hycB Formate hydrogenlyase subunit 2 Escherichia coli (strain K12)
P0AAK2 5.41e-07 53 22 7 218 3 hycB Formate hydrogenlyase subunit 2 Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P37127 5.23e-06 51 30 5 121 2 aegA Putative oxidoreductase AegA Escherichia coli (strain K12)
P31894 7.31e-06 49 26 9 210 1 cooF Iron-sulfur protein Rhodospirillum rubrum
Q57712 1.29e-05 48 30 5 127 3 MJ0264 Uncharacterized protein MJ0264 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P0AAL8 2.42e-05 48 28 2 96 4 ydhY Uncharacterized ferredoxin-like protein YdhY Shigella flexneri
P0AAL6 2.42e-05 48 28 2 96 2 ydhY Uncharacterized ferredoxin-like protein YdhY Escherichia coli (strain K12)
P0AAL7 2.42e-05 48 28 2 96 4 ydhY Uncharacterized ferredoxin-like protein YdhY Escherichia coli O157:H7
Q57619 0.000117 45 27 7 151 3 MJ0155 Uncharacterized ferredoxin MJ0155 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P23481 0.000629 43 26 6 145 2 hyfA Hydrogenase-4 component A Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00155
Feature type CDS
Gene hybA
Product hydrogenase 2 operon protein HybA
Location 54497 - 55510 (strand: 1)
Length 1014 (nucleotides) / 337 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_2404
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13247 4Fe-4S dicluster domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0437 Energy production and conversion (C) C Fe-S-cluster-containing dehydrogenase component (DMSO reductase)

Kegg Ortholog Annotation(s)

Protein Sequence

MNRRHFFKLASGGVLLAGMAPTASHAAAQNRPPIPGALGMLYDSTLCVGCQACVTKCQEINHPEPMERGDTYANGDPIWSNNDKLSPYTNNIIQIWRDGTGENKDQLENGYAFIKKQCMHCVDANCVSVCPVSALTKDPKTGIVHYHADICTGCRYCMVGCPYNIPKYDYDDPFGKLYKCELCNQKGVERLDKGLLPGCVEVCPTGAVIFGTREELLEEAKRRLAKKAGEEYHYPRQTINGGDTYLHKIPEYQDHIYGEFEGGGTQVMVLSAVPFENLGMPEVAPLSTGARSEHIQHTLYKGMVLPIAALAGITYLVNRNSKKQEQEHHKEDNDVES

Flanking regions ( +/- flanking 50bp)

CAATTAGGCCGTGACAAAAATACCACAGGAGCCTCACAGGAGGATAAACGGTGAATAGGCGTCATTTCTTTAAGCTGGCATCAGGTGGGGTTCTCCTTGCGGGAATGGCACCCACTGCGAGTCATGCTGCGGCGCAGAACCGTCCTCCAATTCCTGGGGCTCTCGGTATGCTCTATGACTCTACACTCTGTGTAGGCTGTCAAGCATGTGTGACAAAATGTCAGGAAATTAATCATCCGGAACCCATGGAGCGTGGTGATACTTATGCTAATGGTGATCCGATCTGGTCAAACAATGACAAACTAAGTCCTTACACAAATAACATTATTCAAATTTGGCGTGATGGAACAGGTGAAAATAAAGATCAACTGGAAAACGGTTATGCCTTTATTAAGAAACAATGTATGCATTGCGTTGATGCTAACTGTGTTTCTGTGTGTCCTGTTTCAGCGTTAACCAAAGATCCGAAAACCGGTATTGTGCATTATCATGCAGATATCTGTACAGGTTGTCGTTACTGTATGGTGGGTTGTCCTTATAACATTCCTAAATACGATTATGATGATCCCTTCGGTAAGCTTTATAAATGTGAACTATGTAACCAAAAAGGGGTAGAGCGCTTAGATAAAGGCTTATTACCCGGCTGTGTTGAGGTTTGTCCAACAGGTGCTGTGATTTTTGGTACTCGTGAAGAGTTGCTTGAAGAAGCAAAACGCCGGTTAGCGAAAAAAGCGGGTGAAGAATATCACTATCCACGCCAAACCATTAATGGTGGCGATACTTATCTACATAAGATCCCAGAATATCAAGATCATATCTATGGTGAGTTTGAAGGTGGTGGTACGCAGGTGATGGTACTTTCCGCGGTGCCTTTTGAAAACCTAGGTATGCCAGAAGTGGCTCCATTATCAACGGGTGCGCGTTCTGAACATATTCAACATACGCTGTATAAAGGTATGGTTTTACCAATAGCAGCGCTTGCGGGCATTACTTATTTGGTTAACCGTAATAGTAAAAAACAAGAGCAGGAACACCATAAGGAGGATAACGATGTCGAGTCATGATCCTCGTCCACTTGGCGGTAAGTTATTTACTTTAGCTGTTAGAGTGTTTT