Homologs in group_3007

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17660 FBDBKF_17660 100.0 Morganella morganii S1 - ABC-type uncharacterized transport system, permease component
EHELCC_18145 EHELCC_18145 100.0 Morganella morganii S2 - ABC-type uncharacterized transport system, permease component
LHKJJB_18200 LHKJJB_18200 100.0 Morganella morganii S3 - ABC-type uncharacterized transport system, permease component
HKOGLL_18000 HKOGLL_18000 100.0 Morganella morganii S5 - ABC-type uncharacterized transport system, permease component
F4V73_RS15040 F4V73_RS15040 90.6 Morganella psychrotolerans - ABC transporter permease subunit

Distribution of the homologs in the orthogroup group_3007

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3007

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q44123 1.83e-08 58 22 5 271 3 fbpB Ferric transport system permease protein FbpB Actinobacillus pleuropneumoniae
Q57341 1.95e-08 58 23 6 275 3 fbpB1 Putative ferric transport system permease protein FbpB 1 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P45170 1.64e-07 55 24 6 258 3 potB Spermidine/putrescine transport system permease protein PotB Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P41032 2.73e-06 51 33 0 77 3 cysU Sulfate transport system permease protein CysT Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P55452 9.07e-06 50 26 9 264 3 NGR_a03680 Probable ABC transporter permease protein y4fN Sinorhizobium fredii (strain NBRC 101917 / NGR234)
O50501 5.5e-05 47 25 7 240 1 ngcG Diacetylchitobiose uptake system permease protein NgcG Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P16701 7.88e-05 47 32 0 77 3 cysU Sulfate transport system permease protein CysT Escherichia coli (strain K12)
Q8FYV0 0.00013 47 24 4 197 3 thiP Thiamine transport system permease protein ThiP Brucella suis biovar 1 (strain 1330)
P10905 0.000283 45 26 11 292 1 ugpA sn-glycerol-3-phosphate transport system permease protein UgpA Escherichia coli (strain K12)
Q7AA80 0.000358 45 26 11 292 3 ugpA sn-glycerol-3-phosphate transport system permease protein UgpA Escherichia coli O157:H7
Q57BC3 0.000387 45 25 3 151 3 thiP Thiamine transport system permease protein ThiP Brucella abortus biovar 1 (strain 9-941)
Q2YLW7 0.000387 45 25 3 151 3 thiP Thiamine transport system permease protein ThiP Brucella abortus (strain 2308)
Q32AT4 0.000457 44 26 11 292 3 ugpA sn-glycerol-3-phosphate transport system permease protein UgpA Shigella dysenteriae serotype 1 (strain Sd197)
Q8YJ03 0.000488 45 25 1 135 3 thiP Thiamine transport system permease protein ThiP Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q8FCQ0 0.000547 44 26 11 292 3 ugpA sn-glycerol-3-phosphate transport system permease protein UgpA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P56343 0.000695 43 28 0 85 3 cysT Probable sulfate transport system permease protein cysT Chlorella vulgaris
Q83PU6 0.000745 44 26 11 292 3 ugpA sn-glycerol-3-phosphate transport system permease protein UgpA Shigella flexneri
Q0SZM0 0.000745 44 26 11 292 3 ugpA sn-glycerol-3-phosphate transport system permease protein UgpA Shigella flexneri serotype 5b (strain 8401)
Q1R5H6 0.000758 43 26 11 292 3 ugpA sn-glycerol-3-phosphate transport system permease protein UgpA Escherichia coli (strain UTI89 / UPEC)
A1AGY3 0.000758 43 26 11 292 3 ugpA sn-glycerol-3-phosphate transport system permease protein UgpA Escherichia coli O1:K1 / APEC
Q0TC08 0.000808 43 26 11 292 3 ugpA sn-glycerol-3-phosphate transport system permease protein UgpA Escherichia coli O6:K15:H31 (strain 536 / UPEC)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_18005
Feature type CDS
Gene -
Product ABC-type uncharacterized transport system, permease component
Location 10043 - 10936 (strand: 1)
Length 894 (nucleotides) / 297 (amino acids)

Contig

Accession ZDB_539
Length 38736 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3007
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00528 Binding-protein-dependent transport system inner membrane component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4132 General function prediction only (R) R ABC-type uncharacterized transport system, permease component

Protein Sequence

MADILPELTAMKSKQHTRPLSRRLPLKPMLLLLPAALLFALFQLAPMLWVIINSFVYEDAWSFGNFTEIFSSPFYIQSFENTLWISGVSAVGGLILAALFAASLQHVPPRPRRWLIAFTNMTGNFSGVPLAFAFIIILGVNGAITLQLKAWGVIEDFNLYSAAGLMLIYLYFQIPLGILLLYPAFDALKPEWEDAAKTMGAGRPAYWRYVALPVLSPALLGTFIILFANAAGAYASTYALTTGNYNMVTIRIASLVSGDLFLEPNMAAALSVLLMVILGFITAVYHWLLKRSYHAKC

Flanking regions ( +/- flanking 50bp)

GAGCGGATACAACAAAGCCGCTGTACCGCGCCTGCTGCGGGAGACGCAACATGGCTGATATTCTGCCGGAGCTGACCGCGATGAAAAGTAAGCAACATACCCGCCCTCTGTCACGCCGTCTGCCGCTGAAACCGATGCTGTTACTGCTCCCGGCTGCTCTGCTGTTCGCGCTTTTCCAGCTTGCGCCGATGTTATGGGTGATTATCAACAGCTTCGTGTATGAAGATGCCTGGTCATTCGGTAACTTTACCGAAATCTTCAGCAGCCCTTTTTATATTCAGTCCTTTGAAAACACCCTGTGGATTTCCGGGGTATCGGCGGTCGGCGGGCTGATCCTCGCCGCACTGTTTGCCGCCTCCTTACAGCACGTCCCGCCGCGTCCGCGCCGCTGGCTGATTGCCTTTACCAATATGACCGGCAACTTCAGCGGTGTGCCGCTGGCGTTTGCTTTCATTATCATTCTCGGCGTCAACGGCGCCATCACCCTGCAACTGAAAGCCTGGGGAGTGATTGAGGATTTCAATCTCTACAGCGCTGCCGGGTTGATGCTGATTTATCTCTATTTTCAGATCCCGCTGGGGATCCTGCTGCTCTATCCGGCGTTTGATGCCCTGAAACCGGAGTGGGAGGATGCCGCCAAAACCATGGGGGCCGGCCGCCCGGCCTACTGGCGCTATGTCGCGCTGCCGGTGCTTTCGCCGGCGCTGCTCGGCACCTTTATCATTCTGTTCGCCAATGCCGCCGGGGCTTATGCCTCCACTTATGCGCTGACCACCGGGAACTACAATATGGTGACCATCCGTATCGCCAGCCTGGTGTCCGGCGACCTGTTCCTGGAGCCGAATATGGCGGCGGCACTCTCTGTCCTGCTGATGGTTATCCTCGGATTCATCACTGCTGTCTATCACTGGCTGCTGAAACGGAGTTACCATGCCAAGTGCTGATCTCACACTCAATCCGCCGTCCATGGCGCGTTATCACAAAATCATGCTCA