Homologs in group_1740

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12135 FBDBKF_12135 100.0 Morganella morganii S1 yijD YijD family membrane protein
EHELCC_14170 EHELCC_14170 100.0 Morganella morganii S2 yijD YijD family membrane protein
LHKJJB_15345 LHKJJB_15345 100.0 Morganella morganii S3 yijD YijD family membrane protein
HKOGLL_14465 HKOGLL_14465 100.0 Morganella morganii S5 yijD YijD family membrane protein
F4V73_RS16930 F4V73_RS16930 90.3 Morganella psychrotolerans - YijD family membrane protein
PMI_RS16040 PMI_RS16040 54.5 Proteus mirabilis HI4320 - YijD family membrane protein

Distribution of the homologs in the orthogroup group_1740

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1740

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AF40 1.35e-41 136 50 1 122 1 yijD Inner membrane protein YijD Escherichia coli (strain K12)
P0AF41 1.35e-41 136 50 1 122 3 yijD Inner membrane protein YijD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AF42 1.35e-41 136 50 1 122 3 yijD Inner membrane protein YijD Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_15265
Feature type CDS
Gene yijD
Product YijD family membrane protein
Location 55481 - 55855 (strand: 1)
Length 375 (nucleotides) / 124 (amino acids)

Contig

Accession ZDB_531
Length 138641 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1740
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF07226 Protein of unknown function (DUF1422)

Protein Sequence

MTEQHRRDKGTLLLAFIVGLSVHGTFSALFNSAVHFSVFPVLALCLAVYCFHQRYLNQMLPEGMPKLVTGTFFLGLFSYNALMRAEYPEAGSNYFSAVFIVIIALWLYRAMKQRRATGQDEVTE

Flanking regions ( +/- flanking 50bp)

GACTCCGATTACACCCCATTAATCTGACACTTATCACCAAGGAGAACGTTATGACGGAACAACATCGCCGTGACAAAGGAACCTTACTGCTCGCTTTTATTGTCGGGCTTTCAGTACACGGTACTTTTTCAGCACTTTTTAATTCCGCAGTCCATTTTTCGGTTTTTCCGGTTCTGGCATTGTGCCTTGCGGTCTATTGTTTCCATCAGCGTTACCTCAACCAGATGCTGCCGGAAGGCATGCCGAAACTGGTAACCGGTACGTTCTTCCTGGGTCTGTTCTCCTATAACGCCCTGATGCGCGCAGAATATCCGGAAGCCGGATCAAACTACTTTTCTGCCGTCTTTATTGTGATTATCGCGTTGTGGCTTTACCGGGCGATGAAACAGCGCCGTGCCACCGGGCAGGATGAAGTGACAGAGTAATCGCGGCAATTTACTGAACATACCCCCGGTGGCAACCCGCTGCCGGGGGT