Homologs in group_1740

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12135 FBDBKF_12135 90.3 Morganella morganii S1 yijD YijD family membrane protein
EHELCC_14170 EHELCC_14170 90.3 Morganella morganii S2 yijD YijD family membrane protein
NLDBIP_15265 NLDBIP_15265 90.3 Morganella morganii S4 yijD YijD family membrane protein
LHKJJB_15345 LHKJJB_15345 90.3 Morganella morganii S3 yijD YijD family membrane protein
HKOGLL_14465 HKOGLL_14465 90.3 Morganella morganii S5 yijD YijD family membrane protein
PMI_RS16040 PMI_RS16040 56.1 Proteus mirabilis HI4320 - YijD family membrane protein

Distribution of the homologs in the orthogroup group_1740

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1740

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AF40 5.12e-39 130 47 1 122 1 yijD Inner membrane protein YijD Escherichia coli (strain K12)
P0AF41 5.12e-39 130 47 1 122 3 yijD Inner membrane protein YijD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AF42 5.12e-39 130 47 1 122 3 yijD Inner membrane protein YijD Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS16930
Feature type CDS
Gene -
Product YijD family membrane protein
Location 8048 - 8422 (strand: -1)
Length 375 (nucleotides) / 124 (amino acids)

Contig

Accession term accessions NZ_VXKB01000007 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 196482 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1740
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF07226 Protein of unknown function (DUF1422)

Protein Sequence

MTEQYRRDKGTLLLAFIVGLTVHGTFSVLFNSLVQFSIFPVIALCLAVYCFHQRYLNQMLPEGMPKLVTGTFFLGLFSYNALLRVEYPEAGSNYLSAVFIVIIALWLYRAMKLRRETGQDEVTE

Flanking regions ( +/- flanking 50bp)

AGATGACACTGATGACAGCCCTTTAACTTAACACTACCAGGGAGAATGCTATGACGGAACAGTACCGCCGTGACAAAGGAACTTTATTGCTCGCGTTTATTGTCGGGCTCACCGTACACGGTACATTTTCAGTTTTATTTAATTCATTGGTTCAGTTTTCGATTTTTCCGGTCATTGCACTTTGCCTGGCTGTGTATTGCTTCCATCAGCGTTACCTTAACCAGATGCTGCCTGAAGGCATGCCGAAATTGGTGACGGGTACGTTTTTCTTAGGGTTGTTCAGTTATAATGCATTACTGCGGGTAGAGTATCCGGAAGCCGGATCAAACTATTTATCTGCCGTGTTTATTGTGATTATCGCACTGTGGTTGTACCGGGCGATGAAACTGCGCCGTGAAACCGGTCAGGATGAAGTGACCGAATAACCGTCGCTGATAGTCGCCGACAAAGACAAAACAAAGAAAACAGAAAAGCC