Homologs in group_1303

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07970 FBDBKF_07970 100.0 Morganella morganii S1 yadH ABC-type multidrug transport system, permease component
EHELCC_13800 EHELCC_13800 100.0 Morganella morganii S2 yadH ABC-type multidrug transport system, permease component
LHKJJB_08605 LHKJJB_08605 100.0 Morganella morganii S3 yadH ABC-type multidrug transport system, permease component
HKOGLL_08155 HKOGLL_08155 100.0 Morganella morganii S5 yadH ABC-type multidrug transport system, permease component
F4V73_RS13015 F4V73_RS13015 96.5 Morganella psychrotolerans - ABC transporter permease
PMI_RS00790 PMI_RS00790 85.9 Proteus mirabilis HI4320 - ABC transporter permease

Distribution of the homologs in the orthogroup group_1303

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1303

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFN9 2.44e-148 417 78 0 256 3 yadH Inner membrane transport permease YadH Shigella flexneri
P0AFN6 2.44e-148 417 78 0 256 1 yadH Inner membrane transport permease YadH Escherichia coli (strain K12)
P0AFN7 2.44e-148 417 78 0 256 3 yadH Inner membrane transport permease YadH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AFN8 2.44e-148 417 78 0 256 3 yadH Inner membrane transport permease YadH Escherichia coli O157:H7
P50333 6.6e-13 70 22 2 248 3 nodJ Nodulation protein J Neorhizobium galegae
P06755 3.24e-12 67 22 4 251 3 nodJ Nodulation protein J Rhizobium leguminosarum bv. viciae
O52619 3.2e-11 65 21 2 246 3 nodJ Nodulation protein J Rhizobium meliloti (strain 1021)
P72336 1.13e-08 57 20 2 240 3 nodJ Nodulation protein J Rhizobium sp. (strain N33)
P24144 9.28e-05 46 22 2 243 3 nodJ Nodulation protein J Rhizobium leguminosarum bv. trifolii

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_14245
Feature type CDS
Gene yadH
Product ABC-type multidrug transport system, permease component
Location 120306 - 121076 (strand: 1)
Length 771 (nucleotides) / 256 (amino acids)

Contig

Accession ZDB_529
Length 159829 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1303
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01061 ABC-2 type transporter

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0842 Defense mechanisms (V) V ABC-type multidrug transport system, permease component

Protein Sequence

MMSLYWVALKTIWRKEITRFMRIWIQTLIPPVITMSLYFIIFGNLIGNRIGEMGGVGYMQFIVPGLIMMSVITNSYANVSSSFFGAKFQKSIEELLVAPVPTHVIIAGFVGGGVARGVLVGILVTLVSLFFVPLQIHSWFMIIATLLMTSILFSLAGLLNALFAKSFDDISIIPTFVLTPLTYLGGVFYSLTLLPAFWQAVSKLNPIVYMISGFRYGFLGISDVSLTTTLGVLSLFIAVFYLLTWRLIEKGRGLRT

Flanking regions ( +/- flanking 50bp)

CTGGAGGAATTATTTGTGCATCTGGTGAATCATGATTTGGAGGCTGCAAAATGATGTCGCTGTACTGGGTGGCGCTGAAAACAATCTGGCGCAAAGAAATCACCCGTTTTATGCGGATTTGGATCCAGACGCTGATCCCGCCGGTGATCACCATGTCACTCTATTTTATTATTTTCGGTAATCTTATCGGTAACCGGATCGGTGAAATGGGCGGTGTCGGTTACATGCAGTTTATCGTGCCCGGCCTGATTATGATGTCAGTGATTACGAACTCCTATGCCAACGTATCCTCTTCTTTTTTCGGGGCAAAATTCCAGAAAAGTATTGAGGAACTGCTGGTGGCTCCGGTGCCGACCCATGTCATTATCGCCGGGTTTGTCGGTGGTGGTGTGGCGCGCGGTGTACTGGTCGGGATCCTGGTCACATTAGTATCTCTGTTCTTTGTGCCGTTACAGATCCACTCCTGGTTTATGATCATTGCCACGCTGCTGATGACTTCGATTCTGTTCTCGCTGGCGGGGCTGCTTAACGCACTGTTTGCGAAAAGCTTTGATGATATCAGCATTATCCCGACGTTTGTCCTGACGCCGCTGACTTACCTGGGCGGGGTGTTTTACTCCCTGACGCTGTTACCGGCGTTCTGGCAGGCGGTGTCGAAACTGAACCCGATTGTCTATATGATCAGCGGCTTCCGTTATGGTTTCCTCGGTATCAGTGATGTCTCTCTGACCACCACCCTCGGGGTACTGAGCCTGTTTATTGCGGTGTTTTATCTGCTGACCTGGCGCCTGATTGAGAAAGGGCGCGGTCTGAGAACCTGATCCTGCTTTCTGATAAAAAACCCGGCATATGGTTGCCGGGTTTTTTGTAT