Homologs in group_2022

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15175 FBDBKF_15175 100.0 Morganella morganii S1 ugpQ Glycerophosphoryl diester phosphodiesterase
EHELCC_11070 EHELCC_11070 100.0 Morganella morganii S2 ugpQ Glycerophosphoryl diester phosphodiesterase
LHKJJB_11275 LHKJJB_11275 100.0 Morganella morganii S3 ugpQ Glycerophosphoryl diester phosphodiesterase
HKOGLL_09885 HKOGLL_09885 100.0 Morganella morganii S5 ugpQ Glycerophosphoryl diester phosphodiesterase
F4V73_RS12270 F4V73_RS12270 80.7 Morganella psychrotolerans - glycerophosphodiester phosphodiesterase family protein
PMI_RS01730 PMI_RS01730 57.8 Proteus mirabilis HI4320 - glycerophosphodiester phosphodiesterase family protein

Distribution of the homologs in the orthogroup group_2022

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2022

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P9WLF0 3.79e-55 183 41 8 270 3 MT2337 Uncharacterized protein MT2337 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P9WLF1 7.33e-55 182 41 8 270 1 Rv2277c Uncharacterized protein Rv2277c Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P37965 8.36e-13 70 26 4 169 1 glpQ Glycerophosphodiester phosphodiesterase Bacillus subtilis (strain 168)
O07592 6.39e-12 67 38 1 99 3 yhdW Putative glycerophosphodiester phosphodiesterase YhdW Bacillus subtilis (strain 168)
A0A8F4N283 1.28e-09 60 31 1 98 1 bagdpd Glycerophosphodiester phosphodiesterase Bacillus altitudinis
P54527 2.75e-09 59 27 2 168 4 yqiK Uncharacterized protein YqiK Bacillus subtilis (strain 168)
Q8RB32 3.4e-09 59 26 2 141 1 UgpQ Glycerophosphodiester phosphodiesterase Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
P9WMU3 3.51e-07 53 28 3 143 1 glpQ1 Probable glycerophosphodiester phosphodiesterase 1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMU2 3.51e-07 53 28 3 143 3 glpQ1 Probable glycerophosphodiester phosphodiesterase 1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P47625 5.57e-07 53 29 2 112 4 MG385 Uncharacterized protein MG385 Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
P75212 1.9e-06 51 24 11 222 4 MPN_566 Uncharacterized protein MG385 homolog Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q3T0T0 1.9e-05 48 33 0 80 2 GDE1 Glycerophosphodiester phosphodiesterase 1 Bos taurus
Q08959 2.4e-05 48 35 0 77 1 PGC1 Phosphatidylglycerol phospholipase C Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q9NZC3 4.34e-05 47 31 0 80 1 GDE1 Glycerophosphodiester phosphodiesterase 1 Homo sapiens
P10908 0.000103 46 29 1 106 1 ugpQ Glycerophosphodiester phosphodiesterase, cytoplasmic Escherichia coli (strain K12)
Q9JL55 0.00011 46 29 0 81 1 Gde1 Glycerophosphodiester phosphodiesterase 1 Rattus norvegicus
Q9JL56 0.000115 46 29 0 81 1 Gde1 Glycerophosphodiester phosphodiesterase 1 Mus musculus
Q8N9F7 0.000224 45 23 2 135 1 GDPD1 Lysophospholipase D GDPD1 Homo sapiens
Q9CRY7 0.000463 44 28 2 111 1 Gdpd1 Lysophospholipase D GDPD1 Mus musculus
Q0VGK4 0.000585 44 27 1 111 2 Gdpd1 Lysophospholipase D GDPD1 Rattus norvegicus

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_11415
Feature type CDS
Gene ugpQ
Product Glycerophosphoryl diester phosphodiesterase
Location 38965 - 39816 (strand: 1)
Length 852 (nucleotides) / 283 (amino acids)

Contig

Accession ZDB_526
Length 188522 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2022
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03009 Glycerophosphoryl diester phosphodiesterase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0584 Lipid transport and metabolism (I) I Glycerophosphoryl diester phosphodiesterase

Protein Sequence

MKKILSALFLSGIVMTAHAAPQIIAHRAATADAPENTLYAIDKALSNKADAIWITLQLSKDNQVVLYRPSDLKSLTDKTGPVSGYSAAELAQTDAARDYNQKNKTHIKASVPALDAVLSRYPDTFFYLDIKSPDASPAVFAQQLDSVLTRHNAKNRVRVYSTGQDYLAALPPSIPVFESRDTTRNALAGSLITHTCDLADNPQPRWYGFELHRNVDVVETFTLGEARSPVVLTWDKTAMDCFRKNNQNHVVLFGIKTPADLQLATELGADGVMVDSLLNMKIK

Flanking regions ( +/- flanking 50bp)

TACAACAGCGTGACATCACACCTGGTCTCATTCTTTCTGACGGACGGATTATGAAAAAAATACTATCAGCCCTTTTCCTGAGTGGCATTGTTATGACAGCCCATGCAGCACCGCAGATTATTGCCCATCGCGCCGCCACGGCGGACGCCCCTGAAAATACCCTTTATGCCATCGATAAGGCGCTGAGTAACAAAGCCGATGCCATCTGGATCACCCTTCAGCTCTCAAAGGACAACCAGGTGGTGTTATACCGCCCGTCTGATCTGAAATCCCTGACCGACAAAACCGGTCCGGTTTCCGGTTACAGCGCCGCAGAACTGGCACAAACCGATGCAGCCCGGGATTATAATCAGAAAAATAAAACCCATATCAAGGCTTCTGTTCCGGCACTGGATGCCGTCCTGAGCCGTTACCCGGATACTTTTTTCTACCTCGATATCAAATCTCCGGACGCCTCACCGGCGGTTTTTGCACAACAGCTGGATTCAGTACTGACCCGTCATAACGCTAAAAACCGTGTCCGTGTCTATTCAACCGGTCAGGATTATCTGGCTGCCCTGCCGCCGTCAATCCCCGTTTTTGAAAGCCGTGATACCACCCGTAATGCACTGGCCGGCAGCCTGATCACACACACCTGTGACCTGGCGGACAATCCGCAGCCACGCTGGTATGGCTTTGAACTGCACCGTAACGTGGATGTGGTTGAAACCTTCACACTGGGTGAAGCACGCTCTCCGGTTGTGCTGACCTGGGATAAAACCGCAATGGACTGTTTTCGTAAAAATAATCAAAACCATGTTGTTCTGTTCGGTATAAAAACACCCGCCGATTTACAACTGGCGACAGAATTGGGTGCAGATGGCGTGATGGTCGATTCGCTGCTCAATATGAAAATAAAATAATTAATCAAGGTATTATTACTTGGTAATTTTACCTGCCTGAAAAATAAGAG