Homologs in group_2045

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15330 FBDBKF_15330 100.0 Morganella morganii S1 tyrA bifunctional chorismate mutase/prephenate dehydrogenase
EHELCC_10915 EHELCC_10915 100.0 Morganella morganii S2 tyrA bifunctional chorismate mutase/prephenate dehydrogenase
LHKJJB_11120 LHKJJB_11120 100.0 Morganella morganii S3 tyrA bifunctional chorismate mutase/prephenate dehydrogenase
HKOGLL_09730 HKOGLL_09730 100.0 Morganella morganii S5 tyrA bifunctional chorismate mutase/prephenate dehydrogenase
F4V73_RS12120 F4V73_RS12120 87.7 Morganella psychrotolerans tyrA bifunctional chorismate mutase/prephenate dehydrogenase
PMI_RS01885 PMI_RS01885 68.9 Proteus mirabilis HI4320 tyrA bifunctional chorismate mutase/prephenate dehydrogenase

Distribution of the homologs in the orthogroup group_2045

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2045

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q02287 0.0 566 73 0 372 3 tyrA T-protein Enterobacter agglomerans
P07023 0.0 558 72 0 373 1 tyrA T-protein Escherichia coli (strain K12)
P43902 2.86e-159 454 59 1 371 1 tyrA T-protein Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8EH68 2.01e-151 435 56 1 372 3 tyrA T-protein Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
Q58029 8.76e-36 138 32 6 276 3 MJ0612 Probable arogenate/prephenate dehydrogenase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
F2RB78 1.04e-09 62 31 7 183 3 cmlC 4-amino-4-deoxyprephenate dehydrogenase Streptomyces venezuelae (strain ATCC 10712 / CBS 650.69 / DSM 40230 / JCM 4526 / NBRC 13096 / PD 04745)
P72540 5.88e-08 57 27 3 189 3 papC 4-amino-4-deoxyprephenate dehydrogenase Streptomyces pristinaespiralis
Q9LMR3 1.75e-06 53 24 10 296 1 TYRAAT2 Arogenate dehydrogenase 2, chloroplastic Arabidopsis thaliana
Q57696 3.76e-06 48 42 0 50 1 aroQ Chorismate mutase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O67085 5.08e-05 48 43 0 46 3 pheA Bifunctional chorismate mutase/prephenate dehydratase Aquifex aeolicus (strain VF5)
Q8ZW59 0.000537 45 43 0 53 3 aroD 3-dehydroquinate dehydratase Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_11260
Feature type CDS
Gene tyrA
Product bifunctional chorismate mutase/prephenate dehydrogenase
Location 9931 - 11052 (strand: -1)
Length 1122 (nucleotides) / 373 (amino acids)

Contig

Accession ZDB_526
Length 188522 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2045
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01817 Chorismate mutase type II
PF02153 Prephenate dehydrogenase, nucleotide-binding domain
PF20463 Prephenate dehydrogenase, dimerization domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1605 Amino acid transport and metabolism (E) E Chorismate mutase

Kegg Ortholog Annotation(s)

Protein Sequence

MSGALTHLRDQIDEVDKSLLSLLAKRLQLVAEVGEVKSQHGLPVYAPDREAAMLASRRQEAESLGVPPDLIEDVLRRIMRESYSRENDKGFKKLNEQARPIVIVGGDGKMGQLFRRMLTLSGYTVRILDSGDWADAPELLADAGMVIVSVPIHLTEQVIKQLPPLPEDCILADLASVKAGPLQAMLAVHNGPVLGLHPMFGPDVGSFAKQVVAFCDGRFPERYQWFLEQITVWGAHLQGIKAQEHDRNMRYIQALRHFTTFAYGRYLAKENVDLAQLLSLSSPIYRLELVMIGRLFAQDPQLYADIIMASEDNLDVIEDYHREFGEAMSLLESRDKAEFISQFSAVSDWFGEHAQRFMKESQGLLQQASDSRR

Flanking regions ( +/- flanking 50bp)

AGCGTGTGGTTCAGTTACAGCAGGCAGGATAATAAAAACAGGCAGGGTGTATGTCCGGTGCATTAACACATTTACGTGATCAAATTGATGAAGTGGATAAATCGCTGCTGTCACTGCTGGCAAAACGCCTGCAGCTAGTGGCGGAAGTCGGGGAAGTGAAAAGCCAGCACGGCCTGCCGGTCTATGCGCCGGATCGCGAAGCCGCAATGCTGGCATCACGGCGGCAGGAGGCGGAATCCCTCGGGGTTCCGCCGGATCTGATAGAGGATGTGCTGCGCCGTATCATGCGGGAGTCCTATTCCCGTGAGAATGATAAAGGGTTTAAAAAGCTCAATGAGCAGGCCCGGCCGATAGTGATTGTCGGTGGTGACGGCAAAATGGGGCAGTTGTTCCGGCGAATGCTGACACTGTCCGGTTATACCGTGCGTATTCTGGACAGCGGCGACTGGGCGGATGCCCCGGAACTGCTGGCAGATGCGGGCATGGTGATTGTCAGTGTGCCTATCCACCTGACCGAACAGGTTATTAAACAATTACCGCCGCTGCCGGAAGATTGCATTCTGGCAGATCTTGCGTCGGTTAAAGCGGGGCCGTTACAGGCGATGCTGGCAGTACACAACGGGCCGGTGCTCGGGTTGCACCCGATGTTCGGGCCGGATGTCGGCAGTTTTGCCAAGCAGGTGGTGGCCTTTTGTGACGGACGTTTCCCGGAGCGGTATCAGTGGTTCCTGGAGCAAATTACAGTCTGGGGCGCGCATTTACAGGGTATTAAGGCGCAGGAGCATGATCGCAATATGCGCTACATTCAGGCGCTGCGTCACTTCACTACCTTTGCTTACGGGCGGTATCTGGCAAAAGAAAATGTCGATCTCGCGCAGCTGCTGTCATTGTCCTCACCGATTTACCGGCTGGAACTGGTCATGATTGGTCGTCTGTTTGCCCAGGATCCGCAGCTTTATGCCGATATCATTATGGCTTCGGAAGATAACCTGGATGTGATAGAGGATTATCACCGTGAGTTCGGTGAAGCCATGTCACTGCTGGAAAGCCGGGATAAAGCAGAGTTTATTTCGCAGTTCTCCGCCGTCAGTGACTGGTTTGGTGAGCACGCACAGCGCTTTATGAAAGAGAGTCAGGGATTACTGCAACAGGCTAGCGACAGCCGCCGCTGATAAATATGAAGGTGCTGATATTTTCAGCACCTTCATACATTGCCGGTTAT