Homologs in group_3390

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13205 FBDBKF_13205 100.0 Morganella morganii S1 - Helix-turn-helix domain-containing protein
EHELCC_08890 EHELCC_08890 100.0 Morganella morganii S2 - Helix-turn-helix domain-containing protein
LHKJJB_05050 LHKJJB_05050 100.0 Morganella morganii S3 - Helix-turn-helix domain-containing protein
HKOGLL_05865 HKOGLL_05865 100.0 Morganella morganii S5 - Helix-turn-helix domain-containing protein

Distribution of the homologs in the orthogroup group_3390

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3390

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69202 4.2e-48 161 36 3 253 1 C2 Repressor protein C2 Salmonella phage P22
Q79S39 5.18e-40 140 35 3 259 4 s087 HTH-type transcriptional regulator for conjugative element SXT Vibrio cholerae
Q8GJK1 5.18e-40 140 35 3 259 4 None HTH-type transcriptional regulator for conjugative element pMERPH Shewanella putrefaciens
Q79RI9 5.18e-40 140 35 3 259 4 ORF-96 HTH-type transcriptional regulator for conjugative element R391 Providencia rettgeri
P03034 2.05e-34 127 32 8 253 1 cI Repressor protein cI Escherichia phage lambda
P75974 3.23e-14 73 39 4 127 4 cohE Prophage repressor CohE Escherichia coli (strain K12)
P03036 2.88e-13 66 51 1 70 1 CRO Regulatory protein cro Enterobacteria phage 434
C6DZY8 3.84e-07 52 34 6 129 3 lexA LexA repressor Geobacter sp. (strain M21)
Q83BT6 3.72e-06 50 24 3 150 1 CBU_1416 Uncharacterized HTH-type transcriptional regulator CBU_1416 Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
B5EA68 3.75e-06 49 34 6 129 3 lexA LexA repressor Citrifermentans bemidjiense (strain ATCC BAA-1014 / DSM 16622 / JCM 12645 / Bem)
P0DOW5 8.04e-06 48 37 6 86 1 lexA LexA repressor Verrucomicrobium spinosum (strain ATCC 43997 / DSM 4136 / JCM 18804 / IFAM 1439)
Q47587 0.000173 45 39 1 64 4 rdgA HTH-type transcriptional regulator RdgA Pectobacterium carotovorum subsp. carotovorum
P61608 0.000244 44 33 7 133 3 lexA1 LexA repressor 1 Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
O27383 0.00069 40 53 1 39 4 MTH_1328 Uncharacterized HTH-type transcriptional regulator MTH_1328 Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q39VQ1 0.000698 43 36 3 88 3 lexA LexA repressor Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15)
P16117 0.000785 41 36 1 71 1 CI Repressor protein CI (Fragment) Enterobacteria phage 434

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_09215
Feature type CDS
Gene -
Product Helix-turn-helix domain-containing protein
Location 244784 - 245560 (strand: -1)
Length 777 (nucleotides) / 258 (amino acids)

Contig

Accession ZDB_523
Length 257158 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3390
Orthogroup size 5
N. genomes 5

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Genomic region

Domains

PF00717 Peptidase S24-like
PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1974 Transcription (K)
Signal transduction mechanisms (T)		 KT SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)

Protein Sequence

MKTLSERLSKVRQELGLTQQELADRAGVTRVAISKAEQGLTKSFNSDTLFDIAKALNVDPYWLQLGSDKADRRSYTDAIFKKKLKLKLADDILSKQLQRPLPISGQNDPSIIDCNIKPHDKQPDSKYSYPKINWVQAGAFARNGDDYSQFEIENWYDSIKYAGERGYWLEVKGDSMSSPVGITFPEGMIILVDPEKDPYPNCYVVAEIKDTNEATFKKFICDSGRDYLKPLNPNYPLIPMDEKIKIIGVVVDAKWDIF

Flanking regions ( +/- flanking 50bp)

CAATTTTAAATGGTACTTTAGTATCAATAATTTTTAGCATGAGGTGCGACATGAAAACATTGTCAGAAAGGCTGAGCAAAGTAAGGCAAGAATTGGGCCTTACACAACAAGAACTTGCTGACAGAGCAGGGGTAACCAGAGTCGCTATCAGTAAGGCAGAACAAGGGCTTACCAAGTCTTTTAATTCTGATACGCTTTTTGATATAGCAAAAGCGCTTAATGTAGACCCGTACTGGCTTCAGTTAGGAAGTGATAAAGCTGATAGGCGATCTTATACCGATGCCATCTTCAAGAAAAAACTGAAGTTAAAGCTGGCGGACGATATATTAAGCAAACAATTGCAACGACCCCTCCCAATTTCAGGTCAAAACGACCCATCAATCATAGACTGTAATATAAAACCTCATGATAAGCAGCCTGACAGCAAATACAGTTATCCGAAAATAAACTGGGTTCAGGCTGGGGCATTTGCTCGCAATGGAGATGACTATAGTCAATTTGAAATTGAAAACTGGTACGATTCAATAAAATATGCAGGGGAGCGAGGTTACTGGCTTGAGGTGAAAGGTGACTCTATGTCATCACCGGTCGGTATCACCTTCCCAGAAGGGATGATTATTTTAGTAGACCCTGAAAAAGATCCGTACCCCAATTGCTATGTTGTTGCAGAGATAAAAGACACTAACGAGGCTACATTTAAAAAATTCATATGCGACTCTGGGCGTGATTATCTGAAGCCATTGAACCCTAACTATCCACTAATCCCAATGGACGAAAAAATAAAAATTATTGGTGTTGTGGTAGATGCAAAATGGGATATTTTTTAATTAGTTACGCATAAAAACCGGGTTATCCCGGTTTTATTTTGCCCTAAAAA