Homologs in group_1820

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13480 FBDBKF_13480 100.0 Morganella morganii S1 ybcI metal-dependent hydrolase
EHELCC_08615 EHELCC_08615 100.0 Morganella morganii S2 ybcI metal-dependent hydrolase
LHKJJB_05325 LHKJJB_05325 100.0 Morganella morganii S3 ybcI metal-dependent hydrolase
HKOGLL_05590 HKOGLL_05590 100.0 Morganella morganii S5 ybcI metal-dependent hydrolase
F4V73_RS03285 F4V73_RS03285 83.1 Morganella psychrotolerans - metal-dependent hydrolase
PMI_RS04955 PMI_RS04955 49.7 Proteus mirabilis HI4320 - metal-dependent hydrolase

Distribution of the homologs in the orthogroup group_1820

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1820

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P64482 6.17e-57 180 50 0 163 3 ydjM Inner membrane protein YdjM Shigella flexneri
P64481 6.17e-57 180 50 0 163 1 ydjM Inner membrane protein YdjM Escherichia coli (strain K12)
O32205 2.99e-11 62 32 1 122 3 yvsG Uncharacterized protein YvsG Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_08940
Feature type CDS
Gene ybcI
Product metal-dependent hydrolase
Location 200737 - 201294 (strand: -1)
Length 558 (nucleotides) / 185 (amino acids)

Contig

Accession ZDB_523
Length 257158 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1820
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04307 LexA-binding, inner membrane-associated putative hydrolase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1988 General function prediction only (R) R Membrane-bound metal-dependent hydrolase YbcI, DUF457 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07038 inner membrane protein - -

Protein Sequence

MTAEGHLLFSVASVVMVHQLQISPDISQGDWLHLIPGALAGALLPDIDHPKSMLGQWVRFISVPISRLCGHRGFTHSLLAILTGVILFRTQLPVSWSVPADFYQAVIVGYLSHLAGDMLTTAGIPLLWPVRWRFCIPLLGSKANKRAERSVALVVLVASFYLPAHWEVWWDHVRELILAQISARL

Flanking regions ( +/- flanking 50bp)

TTTATACTGTAACACTGTATAAATAAACACCTGAGTATTTACCCGGTATCATGACAGCTGAGGGTCACCTGCTTTTCTCTGTCGCTTCTGTAGTGATGGTTCATCAGCTTCAGATTTCGCCTGATATCAGTCAGGGGGACTGGCTGCACCTGATCCCCGGCGCCCTCGCCGGTGCTCTGCTGCCGGATATCGATCATCCTAAATCCATGCTGGGTCAGTGGGTTCGCTTTATTTCAGTGCCAATCTCCCGCCTGTGCGGCCACCGGGGTTTCACCCACAGTCTGCTGGCAATTCTGACCGGCGTTATTCTGTTCCGCACACAACTGCCGGTCAGCTGGTCTGTTCCGGCAGATTTTTATCAGGCCGTGATTGTCGGGTATCTCAGCCACCTGGCCGGGGATATGCTGACGACCGCCGGGATCCCGCTGTTATGGCCGGTACGCTGGCGTTTCTGCATCCCGCTGCTGGGCAGCAAAGCCAATAAACGGGCGGAACGCAGTGTGGCGCTGGTTGTACTGGTGGCCTCGTTCTATCTGCCTGCTCACTGGGAGGTCTGGTGGGATCATGTCCGGGAACTGATACTGGCTCAGATATCGGCCAGGCTATAAATAATCCGTTTTATATAACCATCAGCTATAGAAAAACATCCGTTTAATGA