Homologs in group_572

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01505 FBDBKF_01505 100.0 Morganella morganii S1 bamE outer membrane protein assembly factor BamE
EHELCC_00040 EHELCC_00040 100.0 Morganella morganii S2 bamE outer membrane protein assembly factor BamE
LHKJJB_04935 LHKJJB_04935 100.0 Morganella morganii S3 bamE outer membrane protein assembly factor BamE
HKOGLL_02110 HKOGLL_02110 100.0 Morganella morganii S5 bamE outer membrane protein assembly factor BamE
F4V73_RS01900 F4V73_RS01900 89.1 Morganella psychrotolerans bamE outer membrane protein assembly factor BamE
PMI_RS09390 PMI_RS09390 62.5 Proteus mirabilis HI4320 bamE outer membrane protein assembly factor BamE

Distribution of the homologs in the orthogroup group_572

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_572

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7CH39 2.59e-58 179 74 0 106 3 bamE Outer membrane protein assembly factor BamE Yersinia pestis
Q7CPZ3 1.59e-56 174 74 0 106 3 bamE Outer membrane protein assembly factor BamE Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A939 1.26e-54 169 72 0 106 3 bamE Outer membrane protein assembly factor BamE Shigella flexneri
Q32CX2 1.26e-54 169 72 0 106 3 bamE Outer membrane protein assembly factor BamE Shigella dysenteriae serotype 1 (strain Sd197)
P0A937 1.26e-54 169 72 0 106 1 bamE Outer membrane protein assembly factor BamE Escherichia coli (strain K12)
P0A938 1.26e-54 169 72 0 106 3 bamE Outer membrane protein assembly factor BamE Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P44057 3.29e-29 105 50 1 103 3 bamE Outer membrane protein assembly factor BamE Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q5E3A2 2.7e-22 87 42 0 104 3 bamE Outer membrane protein assembly factor BamE Aliivibrio fischeri (strain ATCC 700601 / ES114)
P0C6Q9 6.07e-21 84 40 1 102 3 bamE Outer membrane protein assembly factor BamE Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F378 6.07e-21 84 40 1 102 3 bamE Outer membrane protein assembly factor BamE Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
A1SV87 2.46e-19 80 39 1 92 3 bamE Outer membrane protein assembly factor BamE Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)
Q8EGW5 1.56e-18 79 39 2 99 3 bamE Outer membrane protein assembly factor BamE Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
E1VAU8 1.65e-16 73 44 1 85 3 bamE Outer membrane protein assembly factor BamE Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9)
Q82WP8 5.49e-14 67 42 0 76 3 bamE Outer membrane protein assembly factor BamE Nitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298)
O68564 6.12e-12 62 33 2 103 3 bamE Outer membrane protein assembly factor BamE Pseudomonas fluorescens
G0A7H1 9.43e-12 62 40 0 70 3 bamE Outer membrane protein assembly factor BamE Methylomonas methanica (strain DSM 25384 / MC09)
F0KFM4 2.47e-11 60 35 2 102 3 bamE Outer membrane protein assembly factor BamE Acinetobacter pittii (strain PHEA-2)
Q4FV24 2.71e-11 60 30 2 110 3 bamE Outer membrane protein assembly factor BamE Psychrobacter arcticus (strain DSM 17307 / VKM B-2377 / 273-4)
Q8PAL4 1.64e-10 57 42 2 75 3 bamE Outer membrane protein assembly factor BamE Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
O68562 1.66e-10 58 32 1 85 1 bamE Outer membrane protein assembly factor BamE Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
B1XT70 3.02e-10 58 33 3 103 3 bamE Outer membrane protein assembly factor BamE Polynucleobacter necessarius subsp. necessarius (strain STIR1)
Q9K1F0 9.44e-10 55 39 2 83 3 bamE Outer membrane protein assembly factor BamE Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Q8K9V7 1.02e-06 47 28 3 85 3 bamE Outer membrane protein assembly factor BamE Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
A0A160PB22 2.7e-05 45 27 4 104 1 tpgA Trimeric autotransporter adhesin- and peptidoglycan-associated protein A Acinetobacter sp. (strain Tol 5)
P57283 0.00015 41 22 1 83 3 bamE Outer membrane protein assembly factor BamE Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_03420
Feature type CDS
Gene bamE
Product outer membrane protein assembly factor BamE
Location 671244 - 671630 (strand: 1)
Length 387 (nucleotides) / 128 (amino acids)

Contig

Accession ZDB_519
Length 680340 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_572
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04355 SmpA / OmlA family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2913 Cell wall/membrane/envelope biogenesis (M) M Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06186 outer membrane protein assembly factor BamE - -

Protein Sequence

MRCKLLIAATTSLLLLTAGCSTLERVVYRPDINQGNYLTPADVAKIQKGMTQQQVAYTLGTPMLRDPFGTQTWYYVFRREPGHEPVKQETLTLVFDSAGTLSQITNTNYKPDGGDETASEIASETVTD

Flanking regions ( +/- flanking 50bp)

TTATTGTCGATTATCATCGTCACAAAGAATCCTAAAGGAATGAAATCACCATGCGTTGTAAATTGCTGATTGCCGCAACGACATCTTTGTTGCTGTTAACTGCCGGTTGTTCCACTCTGGAGCGTGTCGTTTACCGCCCGGATATCAACCAGGGTAACTACCTGACACCGGCAGACGTGGCGAAGATCCAGAAAGGAATGACCCAACAGCAAGTCGCCTATACACTCGGTACCCCGATGTTACGTGACCCGTTCGGAACACAGACCTGGTATTATGTCTTCCGCCGTGAACCGGGCCATGAGCCGGTGAAACAGGAAACACTGACACTGGTCTTTGACTCAGCCGGTACACTGAGCCAAATCACGAACACCAATTACAAGCCTGACGGCGGTGACGAAACAGCAAGTGAAATCGCCAGTGAGACTGTCACTGACTGATTACCTGTTGTCACGCTGAAACAACGTGTGGTTAACAACAAAAAACCCGC