Homologs in group_2502

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01850 FBDBKF_01850 100.0 Morganella morganii S1 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
EHELCC_02320 EHELCC_02320 100.0 Morganella morganii S2 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
LHKJJB_00895 LHKJJB_00895 100.0 Morganella morganii S3 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
HKOGLL_00935 HKOGLL_00935 100.0 Morganella morganii S5 araH Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
F4V73_RS04195 F4V73_RS04195 92.4 Morganella psychrotolerans - ABC transporter permease

Distribution of the homologs in the orthogroup group_2502

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2502

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P36948 3.41e-43 154 32 4 304 3 rbsC Ribose import permease protein RbsC Bacillus subtilis (strain 168)
P44736 2.07e-34 131 29 3 297 3 rbsC Ribose import permease protein RbsC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AGI1 2.03e-32 125 30 7 321 1 rbsC Ribose import permease protein RbsC Escherichia coli (strain K12)
P0AGI2 2.03e-32 125 30 7 321 3 rbsC Ribose import permease protein RbsC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI3 2.03e-32 125 30 7 321 3 rbsC Ribose import permease protein RbsC Escherichia coli O157:H7
Q2PBL9 1.14e-31 124 30 9 307 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus luminescens
Q2PBM2 2.33e-31 123 28 7 313 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus temperata
Q7N2D8 2.87e-31 123 30 9 299 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
P0AE27 8.9e-31 121 29 5 309 3 araH L-arabinose transport system permease protein AraH Shigella flexneri
P0AE26 8.9e-31 121 29 5 309 2 araH L-arabinose transport system permease protein AraH Escherichia coli (strain K12)
Q1JUP6 2.2e-30 120 30 3 310 3 araH L-arabinose ABC transporter permease protein AraH Azospirillum brasilense
A7FMJ8 3.11e-28 115 29 7 305 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
P32720 3.69e-28 114 29 3 316 1 alsC D-allose transport system permease protein AlsC Escherichia coli (strain K12)
A4TQL6 5.44e-28 114 29 7 305 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis (strain Pestoides F)
Q1CN16 5.44e-28 114 29 7 305 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Nepal516)
A9R075 5.44e-28 114 29 7 305 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Angola)
Q7CG49 5.44e-28 114 29 7 305 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis
Q1C137 5.44e-28 114 29 7 305 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Antiqua)
P77315 8.32e-28 114 29 6 327 3 yphD Probable ABC transporter permease protein YphD Escherichia coli (strain K12)
B1JLQ1 1.12e-27 114 29 7 305 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ0 1.19e-27 114 29 7 305 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3G0 1.19e-27 114 29 7 305 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A1JJ54 4.88e-27 112 31 9 290 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P55569 6.8e-26 108 30 7 320 3 NGR_a02490 Probable ABC transporter permease protein y4mJ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
B1JLQ2 6.37e-25 105 29 8 329 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ1 6.37e-25 105 29 8 329 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3F9 7.72e-25 105 29 8 329 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A7FMJ9 9.93e-25 105 29 8 329 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A4TQL7 1.8e-24 104 29 8 329 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis (strain Pestoides F)
Q1CN17 1.8e-24 104 29 8 329 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Nepal516)
A9R076 1.8e-24 104 29 8 329 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Angola)
Q7CG48 1.8e-24 104 29 8 329 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis
Q1C136 1.8e-24 104 29 8 329 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Antiqua)
P44885 5.43e-24 103 28 7 310 3 mglC Galactose/methyl galactoside import permease protein MglC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q2PBM1 8.75e-24 102 29 5 323 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus temperata
Q2PBL8 1.43e-23 102 29 8 322 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus luminescens
Q7N2D7 1.86e-23 102 29 8 322 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
P37772 1.94e-23 102 29 4 291 1 yjfF Inner membrane ABC transporter permease protein YjfF Escherichia coli (strain K12)
Q5PJE5 2.22e-23 101 28 8 330 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8Z2X7 3.28e-23 101 28 8 330 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhi
Q8ZKQ2 3.41e-23 101 28 8 330 1 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MZG3 3.41e-23 101 28 8 330 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q57HE1 3.41e-23 101 28 8 330 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella choleraesuis (strain SC-B67)
A1JJ53 4.02e-22 98 30 7 291 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P0AGI7 2.43e-20 94 26 5 360 3 xylH Xylose transport system permease protein XylH Shigella flexneri
P0AGI4 2.43e-20 94 26 5 360 1 xylH Xylose transport system permease protein XylH Escherichia coli (strain K12)
P0AGI5 2.43e-20 94 26 5 360 3 xylH Xylose transport system permease protein XylH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI6 2.43e-20 94 26 5 360 3 xylH Xylose transport system permease protein XylH Escherichia coli O157:H7
A4WER3 2.56e-20 93 31 8 286 3 lsrC Autoinducer 2 import system permease protein LsrC Enterobacter sp. (strain 638)
P45045 7.23e-20 92 25 3 355 3 xylH Xylose transport system permease protein XylH Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8Z2X6 8.06e-20 92 28 7 301 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhi
Q57HE2 1.68e-19 91 27 4 299 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella choleraesuis (strain SC-B67)
B1IRU6 3.41e-19 90 27 6 287 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A067 3.41e-19 90 27 6 287 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O9:H4 (strain HS)
A9MZG2 4.87e-19 89 28 7 301 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q8ZKQ3 5.38e-19 89 28 7 301 1 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PJE6 5.38e-19 89 28 7 301 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi A (strain ATCC 9150 / SARB42)
P77672 1.37e-18 88 28 8 289 1 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12)
B1XEA2 1.37e-18 88 28 8 289 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12 / DH10B)
Q8XAY8 1.64e-18 88 28 8 289 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O157:H7
Q4J711 2.15e-18 88 27 8 324 1 xylH Xylose/arabinose import permease protein XylH Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
Q0T4L8 2.31e-18 87 28 7 289 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri serotype 5b (strain 8401)
B1LFA1 4.61e-18 87 26 6 287 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain SMS-3-5 / SECEC)
A6TEB7 6.55e-18 86 30 6 298 3 lsrC Autoinducer 2 import system permease protein LsrC Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q83RD8 6.8e-18 86 26 3 285 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri
P0AFS2 4.06e-17 84 29 7 329 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri
Q0T4L7 4.06e-17 84 29 7 329 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri serotype 5b (strain 8401)
B1LFA0 4.06e-17 84 29 7 329 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain SMS-3-5 / SECEC)
P0AFS1 4.06e-17 84 29 7 329 1 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12)
B1IRU5 4.06e-17 84 29 7 329 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A068 4.06e-17 84 29 7 329 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O9:H4 (strain HS)
B1XEA3 4.06e-17 84 29 7 329 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12 / DH10B)
Q8G846 5.84e-17 84 25 10 347 1 fruF Fructose import permease protein FruF Bifidobacterium longum (strain NCC 2705)
Q8X504 1.1e-16 82 29 7 329 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O157:H7
A6TEB6 1.17e-16 82 29 7 305 3 lsrD Autoinducer 2 import system permease protein LsrD Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A4WER2 1.66e-15 79 29 7 306 3 lsrD Autoinducer 2 import system permease protein LsrD Enterobacter sp. (strain 638)
Q9F9B1 2.96e-15 79 23 6 311 1 frcC Fructose import permease protein FrcC Rhizobium meliloti
Q57321 6.23e-15 79 25 9 321 3 mglC Galactose/methyl galactoside import permease protein MglC Treponema pallidum (strain Nichols)
P23200 2.06e-13 73 30 7 320 1 mglC Galactose/methyl galactoside import permease protein MglC Escherichia coli (strain K12)
Q56036 3.84e-13 72 29 7 320 1 mglC Galactose/methyl galactoside import permease protein MglC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8G845 7.12e-13 72 27 3 282 1 fruG Fructose import permease protein FruG Bifidobacterium longum (strain NCC 2705)
P39328 8.72e-11 65 28 5 275 1 ytfT Galactofuranose transporter permease protein YtfT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_01140
Feature type CDS
Gene araH
Product Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component
Location 234156 - 235151 (strand: 1)
Length 996 (nucleotides) / 331 (amino acids)

Contig

Accession ZDB_519
Length 680340 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2502
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF02653 Branched-chain amino acid transport system / permease component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1172 Carbohydrate transport and metabolism (G) G Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component

Protein Sequence

MLKSCRHLFAHHEFWLAVLIVLLSVFLSITNEDFMTLGNVFDMTTSTAILAIMACGLFVVLVSGGIDISFPATAATAQYVMATYVLSQGGNFFIAFAIAAIVGLLLGLINALLIYRLKVPSIIITISTLNVFFGLLIYFTNGEWLYGFPEWFMDGVEVMSFTGSDGYDYGLSLPILTLIAVIIFTGFLMSKTRIGRQIYAVGGNADAAKRVGISILGVMLFVYGYMGALAGIASVVQTQITQSVAPNALMGFELTVLAAVVLGGVSMTGGKGSLTGVILGVALLAIVKNGLTLAGVPSYWHTVLTGLIIVISISFTAYNEKRRAAAGGHLS

Flanking regions ( +/- flanking 50bp)

TGAGTTCAATCCGTTAACCACAACGGAACAGGCAATCACGGAGGCGGTTAATGCTTAAGTCATGTCGTCATCTGTTTGCACATCATGAGTTCTGGCTGGCGGTATTAATTGTGCTGCTCAGTGTGTTTCTCAGCATTACCAATGAAGATTTTATGACATTGGGCAATGTGTTTGATATGACCACCAGCACCGCTATCCTGGCAATTATGGCCTGTGGTCTGTTTGTGGTGCTGGTCTCCGGCGGGATTGATATCTCCTTCCCGGCCACGGCGGCCACCGCACAGTATGTGATGGCGACGTATGTGCTGTCACAGGGCGGCAATTTCTTTATCGCCTTTGCTATCGCGGCGATTGTTGGTTTACTGCTGGGGCTGATCAATGCCCTGCTGATTTACCGCCTGAAAGTACCGTCTATTATTATCACCATTTCCACCCTGAACGTCTTTTTCGGCCTGCTGATCTATTTCACCAACGGCGAATGGCTGTACGGTTTCCCGGAGTGGTTTATGGATGGGGTTGAGGTGATGTCATTTACCGGCAGCGACGGTTATGACTACGGCCTGTCCCTGCCGATCCTGACCCTGATTGCCGTGATTATTTTCACCGGTTTTCTGATGAGCAAAACCCGTATCGGCCGTCAGATTTATGCGGTCGGCGGTAATGCGGATGCCGCGAAGCGTGTCGGTATCAGCATTCTCGGCGTGATGCTGTTTGTTTACGGCTATATGGGCGCGCTGGCAGGAATTGCTTCTGTGGTGCAGACACAAATTACTCAGTCCGTTGCACCGAATGCCCTGATGGGCTTTGAACTGACAGTGCTGGCAGCCGTGGTATTAGGCGGTGTCAGTATGACCGGCGGCAAAGGCTCTCTTACCGGGGTTATCCTCGGGGTTGCCCTGCTGGCAATTGTCAAAAACGGCCTGACCCTGGCCGGTGTACCGTCTTACTGGCACACCGTGCTAACCGGGCTTATCATTGTTATCAGTATCAGCTTCACCGCGTATAACGAAAAACGCCGTGCCGCTGCCGGAGGTCATCTGTCATGATGTCAATGCTGAATCTGCGGAGTGACCGCAACATTATTTACCTGCTGGTG