Homologs in group_3608

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20090 FBDBKF_20090 100.0 Morganella morganii S1 rnlB Type II toxin-antitoxin system RnlB family antitoxin
EHELCC_19375 EHELCC_19375 100.0 Morganella morganii S2 rnlB Type II toxin-antitoxin system RnlB family antitoxin
NLDBIP_19505 NLDBIP_19505 100.0 Morganella morganii S4 rnlB Type II toxin-antitoxin system RnlB family antitoxin
HKOGLL_19385 HKOGLL_19385 100.0 Morganella morganii S5 rnlB Type II toxin-antitoxin system RnlB family antitoxin

Distribution of the homologs in the orthogroup group_3608

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3608

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P52130 1.83e-72 214 78 0 123 1 rnlB Antitoxin RnlB Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_19445
Feature type CDS
Gene rnlB
Product Type II toxin-antitoxin system RnlB family antitoxin
Location 4248 - 4628 (strand: 1)
Length 381 (nucleotides) / 126 (amino acids)

Contig

Accession ZDB_392
Length 12946 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3608
Orthogroup size 5
N. genomes 5

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Genomic region

Domains

PF15933 Antitoxin to bacterial toxin RNase LS or RnlA

Protein Sequence

MFEITGVNISGSLKAVVMATGYENPLSSVNEVEMKLTDLLGQDKSGKILFDLLCANGPEWNRFVTLEMKHGRIILNSAKIIDEHEIPAQVLSKLTFTLRNHPEYLEASVLTPDDVRQVLSVDMQGA

Flanking regions ( +/- flanking 50bp)

ACTAATGACCAAAGCCACTAAAGCGTGGCAAATAATCAAGGATTTGTATCTTGTTTGAAATTACCGGGGTTAACATCTCAGGATCTCTTAAGGCTGTCGTTATGGCGACCGGCTACGAAAACCCGTTGTCTTCAGTCAATGAAGTTGAGATGAAACTCACTGACCTACTGGGCCAGGATAAAAGTGGTAAAATCCTTTTCGATCTCCTATGCGCTAACGGTCCTGAGTGGAACAGATTTGTGACACTTGAAATGAAACATGGCCGCATCATACTGAATTCGGCCAAAATTATTGATGAGCACGAAATACCAGCACAAGTCCTGAGTAAACTGACTTTTACTTTACGGAATCACCCTGAGTACTTAGAAGCGTCCGTATTAACTCCCGATGATGTTCGCCAAGTCCTTTCAGTGGATATGCAAGGGGCTTGATAGTCAGTAAATGAATCATCGCTTCAAAAAATTCCGGATTGGGATCATTG