Homologs in group_140

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9 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00070 FBDBKF_00070 97.6 Morganella morganii S1 - Ig-like domain (Group 2)
FBDBKF_11450 FBDBKF_11450 100.0 Morganella morganii S1 - Ig-like domain (Group 2)
EHELCC_01475 EHELCC_01475 97.6 Morganella morganii S2 - Ig-like domain (Group 2)
EHELCC_17765 EHELCC_17765 100.0 Morganella morganii S2 - Ig-like domain (Group 2)
NLDBIP_01985 NLDBIP_01985 97.6 Morganella morganii S4 - Ig-like domain (Group 2)
NLDBIP_05095 NLDBIP_05095 100.0 Morganella morganii S4 - Ig-like domain (Group 2)
LHKJJB_00050 LHKJJB_00050 97.6 Morganella morganii S3 - Ig-like domain (Group 2)
HKOGLL_00090 HKOGLL_00090 97.6 Morganella morganii S5 - Ig-like domain (Group 2)
HKOGLL_15355 HKOGLL_15355 100.0 Morganella morganii S5 - Ig-like domain (Group 2)

Distribution of the homologs in the orthogroup group_140

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_140

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P03733 3.59e-05 47 40 1 85 1 V Tail tube protein Escherichia phage lambda

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_19210
Feature type CDS
Gene -
Product Ig-like domain (Group 2)
Location 13060 - 13821 (strand: -1)
Length 762 (nucleotides) / 253 (amino acids)

Contig

Accession ZDB_389
Length 21687 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_140
Orthogroup size 10
N. genomes 5

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Genomic region

Domains

PF02368 Bacterial Ig-like domain (group 2)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5492 General function prediction only (R) R Uncharacterized conserved protein YjdB, contains Ig-like domain

Protein Sequence

MAQCPDDKGLVMGNAGILRIAPGCPGTVPEQSAFLRLGALTSKGLDYGTETVTSKADDTKGLTEAIVTGLDLTIKFDGELKRKGADGSTSAFDIAKEILAEVKASRQPSYWVQLDMKGDGSDVIQGYMNFTSWSMEFPTKEIATYSGELKVADADSFEWLQEEIVVQSITANPATLTVKAGETASFTVGFTPVDATNKNYEVVSDKPNFATVSKLLNVVTVTGVVAAAGTANITVTSEDGSKTAKCVVTVTAA

Flanking regions ( +/- flanking 50bp)

AACAGGTCGCTTATGCGGCCTTTTTTATTTGCAAATAAAGAGGTTACAACATGGCACAATGCCCTGATGATAAAGGCCTGGTGATGGGTAATGCGGGAATTCTCCGCATCGCGCCCGGTTGCCCGGGTACGGTTCCTGAACAGTCAGCGTTTCTGCGTCTCGGCGCACTGACCAGTAAAGGGCTGGATTACGGTACTGAAACGGTTACTTCCAAAGCAGACGACACAAAAGGGTTGACCGAGGCCATTGTGACCGGTCTGGATTTAACCATTAAGTTTGATGGTGAGCTGAAGCGCAAAGGTGCTGATGGCTCCACGTCTGCTTTTGATATTGCCAAAGAAATCCTTGCTGAAGTCAAGGCCAGTCGTCAGCCGTCATATTGGGTGCAGCTCGACATGAAAGGCGATGGTAGTGATGTGATTCAGGGGTATATGAACTTCACATCATGGTCGATGGAGTTCCCGACCAAAGAGATCGCCACGTATTCCGGTGAGCTGAAAGTCGCAGACGCTGACAGCTTTGAGTGGTTGCAGGAAGAAATCGTGGTGCAGAGCATCACCGCCAACCCTGCGACACTGACAGTGAAGGCTGGTGAAACTGCCTCGTTCACTGTCGGATTTACTCCGGTTGATGCGACAAACAAAAATTACGAAGTGGTCAGCGATAAGCCTAACTTCGCTACCGTCAGTAAGTTATTGAATGTTGTCACTGTAACCGGTGTCGTCGCCGCCGCCGGTACCGCGAATATTACAGTCACATCGGAAGATGGCAGTAAGACGGCGAAATGCGTCGTTACAGTCACTGCGGCCTAAATATTACAAAGGGTATCTCCGGGTGCCCTTGATAATGTTCAGGAGGATAT