COG5492


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG5492, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 10 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized conserved protein YjdB, contains Ig-like domain
Function(s) descr. General function prediction only (R)

Occurence in the database

COG5492 is associated with 10 different proteins (see tab "Protein list" and "Profile")
The 10 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_140 FBDBKF_00070 13893 14648 -1 Ig-like domain (Group 2) Morganella morganii S1
1 group_140 FBDBKF_11450 86381 87142 1 Ig-like domain (Group 2) Morganella morganii S1
2 group_140 EHELCC_01475 294220 294975 1 Ig-like domain (Group 2) Morganella morganii S2
3 group_140 EHELCC_17765 13573 14334 -1 Ig-like domain (Group 2) Morganella morganii S2
4 group_140 NLDBIP_01985 385161 385916 -1 Ig-like domain (Group 2) Morganella morganii S4
5 group_140 NLDBIP_05095 13399 14160 -1 Ig-like domain (Group 2) Morganella morganii S4
6 group_140 LHKJJB_00050 6769 7524 1 Ig-like domain (Group 2) Morganella morganii S3
7 group_140 LHKJJB_19210 13060 13821 -1 Ig-like domain (Group 2) Morganella morganii S3
8 group_140 HKOGLL_00090 12280 13035 1 Ig-like domain (Group 2) Morganella morganii S5
9 group_140 HKOGLL_15355 14363 15124 -1 Ig-like domain (Group 2) Morganella morganii S5