Homologs in group_3659

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3 homologs were identified in 3 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12475 FBDBKF_12475 98.7 Morganella morganii S1 xerC Site-specific tyrosine recombinase XerC
EHELCC_19230 EHELCC_19230 100.0 Morganella morganii S2 xerC Site-specific tyrosine recombinase XerC
NLDBIP_19200 NLDBIP_19200 100.0 Morganella morganii S4 xerC Site-specific tyrosine recombinase XerC

Distribution of the homologs in the orthogroup group_3659

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3659

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P16407 2.02e-16 83 25 13 392 3 int Integrase Escherichia phage HK022
P27077 2.21e-15 80 23 13 381 3 int Integrase Enterobacteria phage P21
P27078 3.66e-15 79 24 15 399 3 int Integrase Enterobacteria phage 434
P03700 8.39e-14 75 24 17 403 1 int Integrase Escherichia phage lambda
P75969 6.38e-08 57 24 15 398 3 intE Prophage integrase IntE Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_19090
Feature type CDS
Gene xerC
Product Site-specific tyrosine recombinase XerC
Location 19393 - 20565 (strand: 1)
Length 1173 (nucleotides) / 390 (amino acids)

Contig

Accession ZDB_387
Length 22432 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3659
Orthogroup size 4
N. genomes 4

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Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG4974 Replication, recombination and repair (L) L Site-specific recombinase XerD

Protein Sequence

MARPRKREFRHLPDFLYYDKSAKCYRFILVNGVRKSVGTDKAKAIAIAREYNNIMRQERTISVTSLITDSGGVNGESLPLAEHFDRLFERIIRDEQPSKSTQSDWIKDAERVKEFFKDIPSAEITLEHVNGFIAEYHADASANVQNRKVGFLKKIFSYAMDESLMLDNPAERKKMKRVDSKRRRRLSYDDFLKIRAAAEPWLRTAMDLALQTTQARLEVSRIKYNIKAPKENTCGCIWFPEERNGIYGMLYIHRQKVQHKEAAHVAIPIGKVIKEIIDNSRDNVASPYVVHRVPERLPNKISQYVNHPTQVAPDYVSRGFSKVRDKVGVGAHLEPDERPTFHEIRALAAFMFKQRGFDPQARMAHSDAESTKIYTENHVDWVEVPHCEIA

Flanking regions ( +/- flanking 50bp)

TGAGTCTGAGGTTTCCTCATGCGTAAGCGATCTGATTAAGGCTTCATAATATGGCACGACCTCGCAAGCGGGAATTCCGGCATCTGCCGGACTTCCTTTACTATGATAAGTCAGCAAAATGTTACCGCTTCATACTTGTAAACGGTGTCCGTAAAAGTGTTGGTACTGACAAGGCAAAAGCTATAGCCATTGCCCGTGAATACAACAATATTATGCGTCAGGAACGTACAATCAGCGTTACCTCGCTGATCACTGACTCTGGTGGTGTTAATGGGGAGTCACTACCACTCGCTGAGCATTTTGATCGGCTGTTCGAACGGATTATTCGTGACGAACAACCGTCTAAAAGTACCCAGTCTGACTGGATAAAAGATGCCGAACGTGTGAAAGAATTTTTTAAAGATATCCCGTCTGCCGAGATCACCCTGGAGCATGTGAACGGATTTATCGCTGAATACCATGCTGACGCATCAGCAAACGTTCAGAACCGGAAAGTCGGATTTTTGAAGAAGATTTTCAGTTACGCAATGGATGAATCGCTGATGCTGGATAACCCGGCAGAACGCAAAAAAATGAAGCGTGTCGACAGTAAACGCCGGCGGCGATTGTCGTATGATGATTTCCTGAAAATCAGAGCGGCTGCTGAACCATGGCTCCGTACTGCTATGGATCTGGCCCTACAGACAACACAGGCACGGCTTGAAGTGTCGCGCATAAAATATAACATTAAAGCACCGAAGGAAAACACCTGCGGATGCATCTGGTTCCCGGAGGAAAGAAACGGGATCTACGGGATGCTGTACATTCACCGGCAGAAAGTACAACACAAGGAAGCTGCTCATGTGGCAATACCGATCGGTAAAGTTATAAAGGAAATTATTGATAACAGCCGCGATAACGTTGCCAGTCCGTACGTTGTTCACCGCGTTCCTGAGCGGTTACCAAACAAAATAAGCCAGTATGTAAACCACCCCACACAGGTGGCACCGGATTATGTCAGCCGGGGATTCTCAAAAGTCAGAGATAAAGTTGGGGTTGGCGCACACCTTGAACCAGATGAGAGGCCAACTTTTCATGAGATCAGAGCGCTGGCCGCATTTATGTTTAAACAACGCGGATTTGATCCACAAGCCAGGATGGCACACAGTGACGCTGAATCAACAAAAATTTATACTGAAAACCATGTTGATTGGGTCGAGGTACCGCACTGTGAAATCGCATAAATACGGGTGGTAAAACGAACTGTAAGCCTATGATTCGTATAGCGCAAATA