Homologs in group_1029

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05800 FBDBKF_05800 100.0 Morganella morganii S1 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK
EHELCC_11790 EHELCC_11790 100.0 Morganella morganii S2 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK
NLDBIP_12130 NLDBIP_12130 100.0 Morganella morganii S4 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK
HKOGLL_10605 HKOGLL_10605 100.0 Morganella morganii S5 erfK Lipoprotein-anchoring transpeptidase ErfK/SrfK
F4V73_RS03525 F4V73_RS03525 88.6 Morganella psychrotolerans - L,D-transpeptidase family protein
PMI_RS06820 PMI_RS06820 65.6 Proteus mirabilis HI4320 - L,D-transpeptidase family protein

Distribution of the homologs in the orthogroup group_1029

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1029

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P75954 6.19e-115 339 58 1 282 1 ycfS Probable L,D-transpeptidase YcfS Escherichia coli (strain K12)
P76193 3.82e-107 320 52 2 316 1 ynhG Probable L,D-transpeptidase YnhG Escherichia coli (strain K12)
P40680 1.18e-106 318 52 5 307 3 erfK Probable L,D-transpeptidase ErfK/SrfK Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P39176 1.21e-102 308 51 6 307 1 erfK Probable L,D-transpeptidase ErfK/SrfK Escherichia coli (strain K12)
P0AAX8 2.27e-102 306 54 5 289 1 ybiS Probable L,D-transpeptidase YbiS Escherichia coli (strain K12)
P0AAX9 2.27e-102 306 54 5 289 3 ybiS Probable L,D-transpeptidase YbiS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AAY0 2.27e-102 306 54 5 289 3 ybiS Probable L,D-transpeptidase YbiS Escherichia coli O157:H7
Q5WC42 9.91e-17 80 32 5 188 3 ABC3535 Putative L,D-transpeptidase YkuD Shouchella clausii (strain KSM-K16)
Q65K99 3.51e-13 70 31 7 188 3 BLi01617 Putative L,D-transpeptidase YkuD Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46)
O34816 8.77e-11 63 29 8 198 1 ykuD Putative L,D-transpeptidase YkuD Bacillus subtilis (strain 168)
P05448 4.31e-09 58 30 2 136 3 None Putative L,D-transpeptidase in ATP synthase subunits region ORF 5 Fuscovulum blasticum
P54539 1.07e-07 54 33 4 121 3 yqjB Putative L,D-transpeptidase YqjB Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_11990
Feature type CDS
Gene erfK
Product Lipoprotein-anchoring transpeptidase ErfK/SrfK
Location 17898 - 18980 (strand: 1)
Length 1083 (nucleotides) / 360 (amino acids)

Contig

Accession ZDB_369
Length 181491 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1029
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01476 LysM domain
PF03734 L,D-transpeptidase catalytic domain
PF17969 L,D-transpeptidase C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1376 Cell wall/membrane/envelope biogenesis (M) M Lipoprotein-anchoring transpeptidase ErfK/SrfK

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19236 L,D-transpeptidase YcfS Cationic antimicrobial peptide (CAMP) resistance -

Protein Sequence

MKRILPLLGGLLLAVTALTARATEYQLPADKGRVIGENVTYIVPDDGRSLEAIAAEYGIGLLAMLEANPGTDPYLPKPGSELIIPSQLILPDTPHQGIVINLAELRLFYYPQGTNTVRVYPIGIGQLGRDTPVMTTSVSQLIKDPTWTPTANIRKAYAAQGITLPAVIPAGPENPMGLFALRLAHGRGEYLIHGTNADFGIGMRVSSGCIRLRPHDIEALFKTIPKGTRVQIVNEPVKYAVEPDGQRYVEVHQPLSRNKNDDPQTMPIARSAGLTSFIQSPDTNSAIVEQAIARRSGMPVNVSRDAEYKQEAAPAEKTNFAPVEMDEEAEVKALNLKPADFAPGQLTQPGPIVREENSAE

Flanking regions ( +/- flanking 50bp)

GGCCGGAAAGCGGCCACGTATTTTTTTATACCATCAGCTGAGGATCTGGAATGAAACGAATTCTCCCGTTGCTGGGCGGGCTGTTGTTAGCGGTTACTGCGTTAACAGCCCGGGCAACCGAATATCAACTCCCTGCGGATAAGGGCCGGGTCATCGGTGAAAACGTCACCTATATTGTGCCGGATGACGGACGCTCACTGGAAGCGATTGCAGCCGAATACGGCATCGGCCTGCTGGCGATGCTGGAAGCTAACCCGGGGACGGATCCGTATCTGCCGAAACCCGGCAGCGAACTGATTATCCCGTCACAACTGATCCTGCCGGACACCCCGCATCAGGGTATTGTGATTAACCTGGCGGAACTGCGTCTGTTCTATTACCCGCAGGGCACCAATACCGTGCGGGTCTACCCGATTGGTATCGGCCAGTTGGGGCGTGATACCCCGGTTATGACCACCTCAGTTTCCCAGCTGATCAAAGATCCGACCTGGACACCAACCGCGAATATCCGCAAAGCCTATGCGGCTCAGGGGATCACGTTACCTGCCGTTATCCCGGCCGGTCCGGAAAACCCGATGGGGCTGTTTGCGCTGCGTTTGGCGCATGGCCGCGGTGAATACCTGATCCACGGCACCAATGCCGACTTTGGTATTGGTATGCGTGTCAGCTCCGGTTGTATCCGTCTGCGTCCGCATGATATTGAAGCACTGTTTAAAACTATTCCGAAAGGTACACGGGTTCAGATCGTGAATGAACCGGTGAAATATGCCGTTGAACCGGATGGTCAGCGCTATGTGGAAGTACACCAGCCGCTGTCCCGTAATAAAAATGACGACCCGCAGACTATGCCGATTGCGCGTTCTGCCGGACTGACCAGCTTTATTCAGTCTCCGGATACCAACAGCGCCATCGTTGAGCAGGCGATTGCCCGCCGCTCCGGTATGCCGGTGAATGTCAGCCGTGATGCGGAGTATAAGCAGGAAGCGGCACCGGCAGAGAAAACCAACTTTGCACCGGTGGAAATGGACGAAGAAGCGGAAGTGAAAGCACTGAACCTGAAACCGGCCGATTTTGCTCCGGGTCAGTTAACCCAGCCGGGTCCGATTGTCCGTGAGGAAAACAGCGCAGAGTAATCTCGCTTTTACGCTGTGACAGATGAAAACCGCTTCCGTTGTGAAGCGGT