Homologs in group_183

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8 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07035 FBDBKF_07035 100.0 Morganella morganii S1 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains
EHELCC_03935 EHELCC_03935 100.0 Morganella morganii S2 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains
NLDBIP_03935 NLDBIP_03935 100.0 Morganella morganii S4 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains
HKOGLL_09210 HKOGLL_09210 100.0 Morganella morganii S5 ybjD putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains
F4V73_RS01225 F4V73_RS01225 85.4 Morganella psychrotolerans - ATP-dependent endonuclease
F4V73_RS11315 F4V73_RS11315 19.4 Morganella psychrotolerans - AAA family ATPase
PMI_RS03370 PMI_RS03370 65.1 Proteus mirabilis HI4320 - ATP-dependent endonuclease
PMI_RS12045 PMI_RS12045 23.6 Proteus mirabilis HI4320 - AAA family ATPase

Distribution of the homologs in the orthogroup group_183

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_183

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P75828 0.0 622 58 4 565 4 ybjD Uncharacterized protein YbjD Escherichia coli (strain K12)
P13520 0.000169 48 28 8 194 1 old Old nuclease Escherichia phage P2

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_09765
Feature type CDS
Gene ybjD
Product putative ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains
Location 113641 - 115323 (strand: -1)
Length 1683 (nucleotides) / 560 (amino acids)

Contig

Accession ZDB_366
Length 191897 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_183
Orthogroup size 9
N. genomes 7

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Genomic region

Domains

PF11398 Protein of unknown function (DUF2813)
PF20469 Overcoming lysogenization defect protein-like, TOPRIM domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3593 Replication, recombination and repair (L) L Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07459 putative ATP-dependent endonuclease of the OLD family - -

Protein Sequence

MILERVEILGFRGINRLSLPLTGNTVLIGENAWGKSSLLDALTLTLSPQALNAKFVLSDFYHAADSEAGPVRHLQIVLTFRETQPGRSRSRRFRELAPLWRTNGDEYLRINYRVSADLADDNTITSQRTFLDEAGEPLLPAETDKFISEIIRLYPVLRLRDARFMRGLRKNVPDCEEEEYDLRTQTETFNNRMADLTRALVSNPQTLSNDDLQDGLEAMKQLLSHYFAEQGEYLLDRRKAKRLNIEPRQRAWQALEGINRVVAGPNQRNVRLIILGMFAALLQSNSGLKLDPYARPIIIVEDPETRLHPIMLSVAWGLLNLFSLQRITTTNSGELLSLVPIHDICRLVRESTRVAAYRLGENHLSPEELRRISFHIRFNRPSALFARCWLLVEGETEIWLMNDLAKQCNYYFETEGIKVIEFAQCGLKPLLKFANKMGIEWHTLVDGDEAGKKYAATAAHFSSGLNDVEQDRLTRLPAPDMEHFLYREGFSRLYHQVADIPENIKMPARRVITKAIHRTSKPDLAIAIANNAASRGVDSIPLLLRRMFSRVAWLARGRAN

Flanking regions ( +/- flanking 50bp)

TGACAGTATTGTCATAAAACAGGCGGTATCCGGCAAACAGTGAGGGAACTATGATTCTGGAAAGAGTGGAAATTCTGGGTTTTCGCGGTATTAACCGCCTGTCATTACCACTGACCGGCAATACGGTACTGATCGGTGAGAACGCCTGGGGGAAATCCAGCCTGCTGGATGCCCTGACGCTGACACTGTCACCGCAGGCACTGAATGCGAAATTTGTTCTGAGTGATTTTTATCACGCTGCTGACAGTGAAGCCGGACCTGTCCGTCACTTACAGATCGTCCTGACATTCCGTGAAACCCAGCCCGGACGTTCCCGCTCCCGCCGTTTCCGTGAGCTGGCACCGCTGTGGCGCACTAACGGGGATGAATATCTGCGGATCAACTACCGCGTCAGCGCGGATCTGGCGGATGATAACACCATTACCAGTCAGCGCACTTTTCTGGATGAGGCGGGCGAGCCGCTGCTGCCGGCGGAAACTGATAAGTTTATCAGTGAGATTATCCGCCTCTATCCGGTGCTGCGTCTGCGGGATGCCCGCTTTATGCGCGGCCTGAGAAAAAATGTGCCTGATTGTGAGGAAGAGGAATATGATCTCCGCACACAAACGGAGACCTTCAATAACCGGATGGCGGATCTGACCCGAGCCCTGGTAAGCAACCCGCAGACACTCTCCAATGATGATTTGCAGGATGGCCTTGAGGCCATGAAACAGCTGCTCAGCCACTATTTTGCCGAGCAGGGGGAGTACCTGCTCGATCGCCGTAAAGCCAAACGGCTGAATATCGAACCGCGCCAGCGGGCGTGGCAGGCGCTGGAAGGGATTAACCGCGTGGTGGCAGGCCCCAACCAGCGTAATGTGCGGCTGATCATCCTCGGTATGTTTGCCGCACTGCTCCAGTCCAACAGCGGTCTGAAGCTCGACCCCTATGCCCGTCCGATCATTATCGTTGAAGACCCGGAAACCCGCCTGCATCCGATCATGTTGTCGGTGGCGTGGGGGCTGCTCAATCTGTTTTCCTTACAGCGCATTACCACCACCAACTCCGGTGAACTGCTTTCACTGGTACCGATTCATGATATCTGCCGCCTGGTGCGGGAATCCACCCGCGTTGCCGCCTACCGGCTGGGGGAAAACCATCTGTCACCGGAAGAGCTGCGGCGTATCTCATTCCACATCCGCTTTAACCGCCCGTCGGCGCTGTTTGCCCGCTGCTGGCTGCTGGTGGAGGGAGAGACGGAAATCTGGCTGATGAACGACCTGGCAAAACAGTGTAATTATTACTTTGAGACCGAAGGGATCAAGGTGATTGAGTTTGCCCAGTGCGGTCTTAAACCTTTGTTAAAGTTTGCCAACAAAATGGGTATAGAATGGCATACGCTGGTTGACGGCGACGAAGCCGGTAAGAAATACGCGGCCACCGCCGCACACTTCTCATCGGGGCTCAATGATGTCGAGCAGGACAGACTGACCCGTCTGCCCGCGCCGGATATGGAGCATTTCTTATATCGCGAGGGGTTCAGCCGCCTGTATCACCAGGTCGCGGATATTCCGGAAAATATAAAAATGCCGGCCCGCCGGGTCATAACCAAAGCGATTCACCGCACCTCAAAACCGGATCTGGCGATTGCGATTGCCAACAATGCGGCCAGCCGGGGTGTGGATTCTATCCCGCTGTTGCTGCGCCGGATGTTTTCCCGCGTGGCATGGCTCGCCAGAGGGCGCGCTAACTGAGGAAAAAGGTGTTAATGAAAGCAGTTTCAAAGAAAAAAATAGTGACCGCC