Homologs in group_2756

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07690 FBDBKF_07690 100.0 Morganella morganii S1 ygfK putative selenate reductase subunit YgfK
EHELCC_13520 EHELCC_13520 100.0 Morganella morganii S2 ygfK putative selenate reductase subunit YgfK
NLDBIP_13965 NLDBIP_13965 100.0 Morganella morganii S4 ygfK putative selenate reductase subunit YgfK
HKOGLL_08435 HKOGLL_08435 100.0 Morganella morganii S5 ygfK putative selenate reductase subunit YgfK
F4V73_RS13410 F4V73_RS13410 92.6 Morganella psychrotolerans ygfK putative selenate reductase subunit YgfK

Distribution of the homologs in the orthogroup group_2756

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2756

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q46811 0.0 1583 73 3 1035 1 ygfK Putative oxidoreductase YgfK Escherichia coli (strain K12)
Q8XD75 0.0 1582 73 3 1035 3 ygfK Putative oxidoreductase YgfK Escherichia coli O157:H7
Q8U195 5.3e-57 207 35 12 427 1 sudA Sulfide dehydrogenase subunit alpha Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Q74FU5 1.36e-54 206 36 14 436 1 sfrB NADPH-Fe(3+) oxidoreductase subunit beta Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
D7AF64 1.36e-54 206 36 14 436 3 sfrB NADPH-Fe(3+) oxidoreductase subunit beta Geobacter sulfurreducens (strain DL-1 / KN400)
P37127 1.9e-46 181 33 17 430 2 aegA Putative oxidoreductase AegA Escherichia coli (strain K12)
P09832 8.94e-45 172 33 18 427 1 gltD Glutamate synthase [NADPH] small chain Escherichia coli (strain K12)
E1V8I0 1.53e-41 162 31 16 422 1 gltD Glutamate synthase [NADPH] small chain Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9)
Q46820 1.11e-38 157 32 18 419 2 uacF Putative oxidoreductase UacF Escherichia coli (strain K12)
Q05756 1.19e-36 148 32 14 424 1 gltD Glutamate synthase [NADPH] small chain Azospirillum brasilense
P76440 1.05e-33 138 27 11 401 1 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT Escherichia coli (strain K12)
Q8ZNL8 1.94e-33 137 26 8 399 3 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8X645 4.1e-33 136 27 10 400 3 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT Escherichia coli O157:H7
O34399 5.82e-33 137 28 20 460 1 gltB Glutamate synthase [NADPH] small chain Bacillus subtilis (strain 168)
A8XKG6 8.86e-33 141 29 13 422 3 dpyd-1 Probable dihydropyrimidine dehydrogenase [NADP(+)] Caenorhabditis briggsae
Q8Z5A6 1.42e-32 135 26 8 399 3 preT NAD-dependent dihydropyrimidine dehydrogenase subunit PreT homolog Salmonella typhi
Q8CHR6 3e-32 139 29 15 423 1 Dpyd Dihydropyrimidine dehydrogenase [NADP(+)] Mus musculus
O89000 1.02e-31 137 29 14 428 2 Dpyd Dihydropyrimidine dehydrogenase [NADP(+)] Rattus norvegicus
Q12882 1.64e-31 137 27 13 421 1 DPYD Dihydropyrimidine dehydrogenase [NADP(+)] Homo sapiens
Q55FT1 2.59e-31 136 29 10 362 2 pyd1 Dihydropyrimidine dehydrogenase [NADP(+)] Dictyostelium discoideum
Q5R895 3.83e-31 135 27 12 421 2 DPYD Dihydropyrimidine dehydrogenase [NADP(+)] Pongo abelii
Q28943 5.6e-31 135 27 14 421 1 DPYD Dihydropyrimidine dehydrogenase [NADP(+)] Sus scrofa
Q28007 6.1e-31 135 27 12 421 1 DPYD Dihydropyrimidine dehydrogenase [NADP(+)] Bos taurus
Q18164 3.9e-30 132 29 14 418 3 dpyd-1 Dihydropyrimidine dehydrogenase [NADP(+)] Caenorhabditis elegans
Q6NYG8 1.31e-28 127 29 13 421 2 dpyd Dihydropyrimidine dehydrogenase [NADP(+)] Danio rerio
P9WN19 1.44e-27 121 27 13 410 1 gltD Glutamate synthase [NADPH] small chain Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WN18 1.44e-27 121 27 13 410 3 gltD Glutamate synthase [NADPH] small chain Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
O08340 3.5e-27 119 32 14 376 3 gltD Putative glutamate synthase [NADPH] small chain Cereibacter sphaeroides
Q9LV03 3.17e-25 117 26 17 463 1 GLT1 Glutamate synthase 1 [NADH], chloroplastic Arabidopsis thaliana
Q0JKD0 1.49e-24 115 28 12 310 2 Os01g0681900 Glutamate synthase 1 [NADH], chloroplastic Oryza sativa subsp. japonica
Q0DG35 1.29e-23 112 28 8 277 2 Os05g0555600 Glutamate synthase 2 [NADH], chloroplastic Oryza sativa subsp. japonica
Q03460 1.35e-23 112 24 16 456 1 None Glutamate synthase [NADH], amyloplastic Medicago sativa
Q9C102 2.27e-23 111 26 9 325 1 glt1 Glutamate synthase [NADH] Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q12680 1.07e-22 109 26 8 305 1 GLT1 Glutamate synthase [NADH] Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q9PKT7 1.71e-07 57 26 12 326 3 trxB Thioredoxin reductase Chlamydia muridarum (strain MoPn / Nigg)
P46843 3.85e-07 57 25 13 347 3 trxB/A Bifunctional thioredoxin reductase/thioredoxin Mycobacterium leprae (strain TN)
Q049B3 4.23e-07 56 23 9 313 3 LBUL_1466 Ferredoxin--NADP reductase Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365 / Lb-18)
Q1G967 4.23e-07 56 23 9 313 3 Ldb1586 Ferredoxin--NADP reductase Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081 / BCRC 10696 / JCM 1002 / NBRC 13953 / NCIMB 11778 / NCTC 12712 / WDCM 00102 / Lb 14)
Q045M0 6.93e-07 56 23 13 326 3 LGAS_0447 Ferredoxin--NADP reductase Lactobacillus gasseri (strain ATCC 33323 / DSM 20243 / BCRC 14619 / CIP 102991 / JCM 1131 / KCTC 3163 / NCIMB 11718 / NCTC 13722 / AM63)
Q58931 7.75e-07 55 24 11 316 3 MJ1536 Putative thioredoxin reductase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q9Z8M4 1.08e-05 52 23 12 321 3 trxB Thioredoxin reductase Chlamydia pneumoniae
P52215 1.4e-05 52 26 10 336 2 trxB Thioredoxin reductase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q4JCM0 2.46e-05 51 22 11 310 3 Saci_0029 Ferredoxin--NADP reductase 1 Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
A5EWE5 3.62e-05 51 33 2 107 3 mnmC tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC Dichelobacter nodosus (strain VCS1703A)
P42593 7e-05 50 32 5 147 1 fadH 2,4-dienoyl-CoA reductase [(2E)-enoyl-CoA-producing] Escherichia coli (strain K12)
Q96YN9 7.9e-05 49 21 12 320 3 STK_21330 Ferredoxin--NADP reductase Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
Q8DUN5 0.000163 48 24 15 358 3 SMU_869 Ferredoxin--NADP reductase Streptococcus mutans serotype c (strain ATCC 700610 / UA159)
Q97WJ5 0.000164 48 23 12 330 3 SSO2222 Ferredoxin--NADP reductase Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Q1WUT6 0.000272 48 25 5 184 3 LSL_0439 Ferredoxin--NADP reductase Ligilactobacillus salivarius (strain UCC118)
Q9C8U0 0.00058 47 65 0 35 2 At1g63370 Flavin-containing monooxygenase FMO GS-OX-like 5 Arabidopsis thaliana
Q38YJ1 0.000584 47 22 8 318 3 LCA_0435 Ferredoxin--NADP reductase 2 Latilactobacillus sakei subsp. sakei (strain 23K)
Q9SXD5 0.000632 47 65 0 35 2 At1g62620 Flavin-containing monooxygenase FMO GS-OX-like 3 Arabidopsis thaliana
Q8U0Q5 0.001 45 56 0 30 3 thi4 Thiamine thiazole synthase Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_08885
Feature type CDS
Gene ygfK
Product putative selenate reductase subunit YgfK
Location 108213 - 111323 (strand: 1)
Length 3111 (nucleotides) / 1036 (amino acids)

Contig

Accession ZDB_365
Length 192330 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2756
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF07992 Pyridine nucleotide-disulphide oxidoreductase
PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0493 Amino acid transport and metabolism (E)
General function prediction only (R)		 ER NADPH-dependent glutamate synthase beta chain or related oxidoreductase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12527 putative selenate reductase [EC:1.97.1.9] Selenocompound metabolism -

Protein Sequence

MGDIMRPVPFGELLNRIFEEYKASRSIFGINERQFYRREHQHPLMSVFGETCETPIGPAAGPHTQLAQNIVVSWLTGGRFIEVKTVQILDELELEKPCIDAQDECFNTEWSTEFTLPKAHDEYLKAWFALHLLEAIFDPRTKGEAKSFIFNMSVGYNLEGIKQPRMQQYIHAMIDSSQLPVFAKYREEMKAFISRPGFLKELGLEDRKADLLAMTDRVPGDLSKGVTLSTMHGCPPDEIEAICRYMLEEKHINTYVKLNPTLLGFPRVREILDTCGFDYIGLSEESFSHDLKLDRALEMLQRLMDLAKEVDRGFGVKLTNTLGTINNKGRLPGGEMYMSGRALFPLSINVAALLSRHFDGKLPISYSGGASKFNIRDIFESGIRPITMATDLLKPGGYMRQTECLRELDKSDAWGMTQIDVGKLNALAERAVSMEYTQKHWKSDQEIDAGGPLPLTDCYVAPCVTACAIKQDIPEYIRLLGEGRYADALELIYQRNALPAITGHICDHQCQYNCTRLDYESALNIRELKKVAVEKGWKEYKARWHKPAGSGDKNPVAVIGAGPAGLAAGYFLARAGHPVTVFEKEANAGGVVANIIPHFRIPRETIEHDIQFVADHGVKFEYGCDPRLTVDKLLEQGFTYVLVAIGTDKNSGVKLAGDNRNVYKSLPFLHDYNNNAPLKMGKHVAVIGAGNTAMDCARAAKRIAGVEDVTVIYRRSQAEMPAWPEEYEEAVEDDVKFMFLHNPEQFNADGTLLVRTMKLGEPDESGRRRPVATEETVTLKIDSVITAIGEQQDCEVLSQIGVPMGEDGWPAVYRNSGETTRANVFLIGDVQSGPSSIVAAIGDAGRATDAILERENILSHYSDKYWLNVDPQDITDRKGAIAVQMVDSDDREAFVKQEAERCLECNYICAKCVDVCPNRANISVAIPGFRNRYQTLHLDAMCNECGNCAQFCPWQGKPYKDKVTIFSLPEDFENSTNPGFLADGSTFTVRLDGKVSKLQLGADGKFSQVPQELEEMCRIMSHVHKHYRYLLGRVEK

Flanking regions ( +/- flanking 50bp)

ATGTCCGGCACCACCGGCATGCCCCCTCATATTGCAGCAAGGAGAGTTTTATGGGAGATATAATGCGTCCCGTCCCGTTCGGCGAACTTCTGAACCGGATCTTTGAAGAATATAAGGCGAGCCGTTCCATTTTTGGTATCAATGAACGGCAGTTTTACCGCAGAGAACATCAGCATCCTCTGATGTCTGTCTTCGGTGAAACCTGCGAGACGCCGATCGGCCCGGCGGCCGGTCCCCATACTCAGCTTGCTCAGAATATTGTGGTTTCCTGGCTGACCGGCGGCCGTTTTATCGAGGTGAAAACCGTTCAGATCCTCGATGAACTTGAGCTCGAAAAGCCGTGTATCGATGCTCAGGACGAATGTTTCAACACCGAATGGTCCACCGAATTTACCCTGCCGAAAGCCCACGACGAATACCTCAAAGCCTGGTTTGCCCTTCATTTATTAGAAGCGATTTTTGACCCGCGCACCAAAGGCGAGGCGAAATCCTTCATCTTTAATATGAGTGTCGGTTATAACCTGGAAGGGATTAAACAGCCGCGTATGCAGCAGTATATCCACGCCATGATCGATTCCTCACAGCTGCCGGTCTTCGCGAAATACCGCGAGGAGATGAAAGCCTTTATTTCCCGTCCGGGCTTCCTGAAAGAGCTGGGTCTGGAAGATCGCAAAGCCGATCTGCTGGCCATGACTGACCGCGTGCCGGGGGATTTATCCAAAGGTGTGACCCTCTCCACCATGCACGGCTGCCCGCCGGATGAGATTGAGGCTATCTGCCGCTACATGCTGGAAGAAAAGCACATCAATACCTATGTGAAGCTGAACCCGACACTACTCGGCTTCCCGCGTGTCCGTGAAATCCTCGACACCTGCGGCTTTGATTACATCGGGCTGAGTGAGGAATCGTTCTCTCATGACCTGAAACTGGATCGCGCCCTGGAAATGTTACAGCGCCTGATGGATCTGGCGAAGGAAGTGGATCGCGGTTTCGGGGTCAAGCTGACCAACACCCTCGGCACCATCAATAACAAAGGGCGTCTGCCGGGCGGCGAGATGTATATGTCAGGCCGAGCCCTGTTCCCGCTCTCCATCAACGTTGCCGCGCTGCTCTCCCGTCATTTTGACGGCAAACTGCCGATTTCTTACTCCGGCGGTGCCAGTAAGTTCAATATCCGCGATATTTTTGAATCCGGTATCCGCCCTATCACCATGGCGACTGACCTGCTGAAACCGGGCGGTTATATGCGCCAGACCGAGTGCCTGCGTGAGCTGGATAAGTCCGATGCGTGGGGCATGACGCAGATTGATGTGGGTAAACTGAATGCGCTGGCAGAACGTGCCGTCAGCATGGAATATACCCAGAAACACTGGAAATCAGACCAGGAAATCGACGCCGGTGGCCCGCTGCCGCTGACCGACTGTTATGTCGCACCGTGTGTGACTGCCTGTGCCATCAAACAGGACATTCCTGAATATATCCGCCTGCTGGGCGAAGGCCGCTATGCGGATGCACTGGAACTGATTTACCAGCGCAACGCCCTGCCTGCCATCACCGGTCATATCTGTGATCACCAGTGCCAGTACAACTGTACCCGCCTGGATTACGAAAGTGCGCTGAATATCCGCGAACTGAAAAAAGTGGCGGTGGAAAAAGGCTGGAAAGAGTACAAAGCCCGCTGGCACAAACCGGCCGGTTCCGGTGATAAAAACCCGGTCGCGGTGATTGGTGCCGGCCCTGCCGGTCTGGCTGCAGGGTATTTCCTTGCCCGTGCCGGTCATCCGGTGACGGTATTTGAGAAAGAAGCCAATGCCGGTGGTGTGGTGGCGAATATCATCCCGCACTTCCGTATCCCGCGTGAAACTATTGAGCACGATATTCAGTTCGTCGCTGACCACGGCGTGAAATTTGAATACGGCTGTGACCCGCGCCTGACCGTCGATAAGTTGCTGGAGCAGGGTTTCACTTATGTGCTGGTCGCGATAGGGACAGACAAAAACAGCGGCGTGAAACTCGCCGGTGATAACCGCAACGTCTATAAATCCCTGCCGTTCCTGCATGATTACAACAACAATGCGCCGCTGAAAATGGGCAAACATGTTGCCGTTATCGGTGCCGGTAACACCGCGATGGACTGCGCCCGTGCCGCCAAACGAATTGCCGGTGTGGAAGATGTGACGGTTATCTACCGCCGTTCTCAGGCAGAAATGCCAGCCTGGCCGGAAGAGTATGAAGAAGCGGTTGAAGATGATGTGAAATTCATGTTCCTGCACAATCCGGAGCAGTTCAATGCTGACGGCACCCTGCTGGTCCGCACCATGAAACTGGGTGAGCCGGATGAGTCAGGCCGCCGCCGTCCGGTGGCGACAGAAGAGACTGTCACCCTGAAAATCGACAGCGTGATCACCGCTATCGGCGAACAGCAGGACTGCGAAGTGCTGTCACAAATCGGCGTGCCGATGGGTGAAGACGGCTGGCCGGCGGTGTACCGCAACAGCGGTGAAACCACCCGCGCCAATGTGTTCCTGATTGGTGATGTGCAGAGCGGCCCGTCCTCTATCGTGGCGGCTATCGGTGATGCAGGTCGTGCGACGGATGCCATTCTGGAGCGCGAAAATATCCTCTCTCACTACAGCGACAAATACTGGCTCAATGTGGATCCGCAGGATATCACTGACCGCAAAGGCGCTATCGCCGTACAGATGGTGGACAGCGACGACCGCGAGGCGTTCGTGAAACAGGAAGCAGAGCGCTGCCTGGAATGTAACTACATCTGTGCGAAATGTGTCGATGTGTGCCCGAACCGCGCCAACATTTCAGTGGCGATTCCGGGCTTCCGTAACCGTTATCAGACCCTGCACCTGGATGCGATGTGTAACGAATGCGGCAACTGTGCCCAGTTCTGCCCGTGGCAGGGCAAGCCGTACAAAGACAAAGTCACTATCTTCAGCCTGCCGGAAGACTTCGAAAACAGCACCAACCCGGGCTTCCTGGCTGACGGCAGCACCTTTACTGTCCGCCTGGACGGCAAAGTCAGCAAATTACAGCTGGGTGCTGACGGGAAATTCAGTCAGGTTCCTCAGGAGCTGGAAGAGATGTGCCGCATCATGAGCCATGTCCATAAACACTATCGTTATCTGTTAGGCCGGGTGGAGAAATAATTATGCTGATTCTGAAAAATGCCACCATCACTGAGTTCGAACCGGCGGGG