Homologs in group_1070

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06060 FBDBKF_06060 100.0 Morganella morganii S1 syd SecY-interacting protein
EHELCC_09105 EHELCC_09105 100.0 Morganella morganii S2 syd SecY-interacting protein
NLDBIP_09485 NLDBIP_09485 100.0 Morganella morganii S4 syd SecY-interacting protein
HKOGLL_07820 HKOGLL_07820 100.0 Morganella morganii S5 syd SecY-interacting protein
F4V73_RS15845 F4V73_RS15845 81.4 Morganella psychrotolerans syd SecY-interacting protein
PMI_RS11335 PMI_RS11335 57.1 Proteus mirabilis HI4320 syd SecY-interacting protein

Distribution of the homologs in the orthogroup group_1070

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1070

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
A1JP93 9.3e-76 228 60 0 180 3 syd Protein Syd Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P60155 3.78e-75 226 61 1 181 3 syd Protein Syd Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
A7FFG1 6.53e-73 220 57 0 180 3 syd Protein Syd Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
B1JQF2 2.51e-72 219 56 0 180 3 syd Protein Syd Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q667I1 2.51e-72 219 56 0 180 3 syd Protein Syd Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TLA1 2.51e-72 219 56 0 180 3 syd Protein Syd Yersinia pestis (strain Pestoides F)
Q1CFD6 2.51e-72 219 56 0 180 3 syd Protein Syd Yersinia pestis bv. Antiqua (strain Nepal516)
A9R2J4 2.51e-72 219 56 0 180 3 syd Protein Syd Yersinia pestis bv. Antiqua (strain Angola)
Q8CZY7 2.51e-72 219 56 0 180 3 syd Protein Syd Yersinia pestis
B2JZ43 2.51e-72 219 56 0 180 3 syd Protein Syd Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1CAP5 2.51e-72 219 56 0 180 3 syd Protein Syd Yersinia pestis bv. Antiqua (strain Antiqua)
Q83QD1 4.83e-72 218 59 0 177 3 syd Protein Syd Shigella flexneri
Q3YY63 8.35e-72 218 59 0 177 3 syd Protein Syd Shigella sonnei (strain Ss046)
Q31XJ7 8.35e-72 218 59 0 177 3 syd Protein Syd Shigella boydii serotype 4 (strain Sb227)
Q1R7P9 8.35e-72 218 59 0 177 3 syd Protein Syd Escherichia coli (strain UTI89 / UPEC)
B1LQY6 8.35e-72 218 59 0 177 3 syd Protein Syd Escherichia coli (strain SMS-3-5 / SECEC)
B6I6J1 8.35e-72 218 59 0 177 3 syd Protein Syd Escherichia coli (strain SE11)
P0A8U0 8.35e-72 218 59 0 177 1 syd Protein Syd Escherichia coli (strain K12)
B1IU48 8.35e-72 218 59 0 177 3 syd Protein Syd Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
P0A8U1 8.35e-72 218 59 0 177 3 syd Protein Syd Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TE65 8.35e-72 218 59 0 177 3 syd Protein Syd Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1AEY0 8.35e-72 218 59 0 177 3 syd Protein Syd Escherichia coli O1:K1 / APEC
A8A3S8 8.35e-72 218 59 0 177 3 syd Protein Syd Escherichia coli O9:H4 (strain HS)
B1XDK2 8.35e-72 218 59 0 177 3 syd Protein Syd Escherichia coli (strain K12 / DH10B)
C4ZZU8 8.35e-72 218 59 0 177 3 syd Protein Syd Escherichia coli (strain K12 / MC4100 / BW2952)
B7LXK9 8.35e-72 218 59 0 177 3 syd Protein Syd Escherichia coli O8 (strain IAI1)
B7NVU1 8.35e-72 218 59 0 177 3 syd Protein Syd Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7LEX3 8.35e-72 218 59 0 177 3 syd Protein Syd Escherichia coli (strain 55989 / EAEC)
B7MLB4 8.35e-72 218 59 0 177 3 syd Protein Syd Escherichia coli O45:K1 (strain S88 / ExPEC)
B7UHK9 8.35e-72 218 59 0 177 3 syd Protein Syd Escherichia coli O127:H6 (strain E2348/69 / EPEC)
A7ZQN6 8.35e-72 218 59 0 177 3 syd Protein Syd Escherichia coli O139:H28 (strain E24377A / ETEC)
B7N727 8.54e-72 218 59 0 177 3 syd Protein Syd Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
P60084 1.1e-71 217 58 0 178 3 syd Protein Syd Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P60085 1.1e-71 217 58 0 178 3 syd Protein Syd Salmonella typhi
B4TUI6 1.1e-71 217 58 0 178 3 syd Protein Syd Salmonella schwarzengrund (strain CVM19633)
B5BF22 1.1e-71 217 58 0 178 3 syd Protein Syd Salmonella paratyphi A (strain AKU_12601)
C0PXF5 1.1e-71 217 58 0 178 3 syd Protein Syd Salmonella paratyphi C (strain RKS4594)
A9N2H6 1.1e-71 217 58 0 178 3 syd Protein Syd Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PEK1 1.1e-71 217 58 0 178 3 syd Protein Syd Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4T4W0 1.1e-71 217 58 0 178 3 syd Protein Syd Salmonella newport (strain SL254)
B4TG15 1.1e-71 217 58 0 178 3 syd Protein Syd Salmonella heidelberg (strain SL476)
B5RDU5 1.1e-71 217 58 0 178 3 syd Protein Syd Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QWQ1 1.1e-71 217 58 0 178 3 syd Protein Syd Salmonella enteritidis PT4 (strain P125109)
Q57KF0 1.1e-71 217 58 0 178 3 syd Protein Syd Salmonella choleraesuis (strain SC-B67)
B5F4R1 1.1e-71 217 58 0 178 3 syd Protein Syd Salmonella agona (strain SL483)
B7MZ89 1.31e-71 217 58 0 177 3 syd Protein Syd Escherichia coli O81 (strain ED1a)
B5Z3F8 2.39e-71 216 59 0 177 3 syd Protein Syd Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8X6T2 2.39e-71 216 59 0 177 3 syd Protein Syd Escherichia coli O157:H7
A9MSB6 3.74e-71 216 57 0 178 3 syd Protein Syd Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
Q0T1Q9 1.13e-70 214 58 0 177 3 syd Protein Syd Shigella flexneri serotype 5b (strain 8401)
B2TZE0 1.13e-70 214 58 0 177 3 syd Protein Syd Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
Q32CC5 2.92e-70 213 58 0 177 3 syd Protein Syd Shigella dysenteriae serotype 1 (strain Sd197)
A7MR09 1.61e-69 212 56 0 178 3 syd Protein Syd Cronobacter sakazakii (strain ATCC BAA-894)
B7LVU6 2.84e-69 211 57 0 180 3 syd Protein Syd Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
B2VFX0 2.87e-69 211 57 0 177 3 syd Protein Syd Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
C6DAH5 9.36e-69 210 55 0 178 3 syd Protein Syd Pectobacterium carotovorum subsp. carotovorum (strain PC1)
A8AP01 1.01e-68 209 57 0 177 3 syd Protein Syd Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q6D8F3 1.58e-68 209 55 0 178 3 syd Protein Syd Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
A4WDY0 2.78e-67 206 56 0 175 3 syd Protein Syd Enterobacter sp. (strain 638)
B5XV06 2.75e-64 198 53 0 180 3 syd Protein Syd Klebsiella pneumoniae (strain 342)
C5BHA8 5.83e-64 197 53 1 177 3 syd Protein Syd Edwardsiella ictaluri (strain 93-146)
A6TD66 1.53e-63 196 52 0 180 3 syd Protein Syd Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
Q87RS5 3.5e-56 178 49 2 181 3 syd Protein Syd Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q6LN11 3.93e-55 175 48 0 181 3 syd Protein Syd Photobacterium profundum (strain SS9)
Q9KTJ9 5.12e-55 175 48 0 177 3 syd Protein Syd Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A7MYB9 6.89e-55 174 49 2 183 3 syd Protein Syd Vibrio campbellii (strain ATCC BAA-1116)
P60156 9.25e-55 174 44 0 177 3 syd Protein Syd Vibrio vulnificus (strain YJ016)
Q8DFB9 9.25e-55 174 44 0 177 3 syd Protein Syd Vibrio vulnificus (strain CMCP6)
B5FAU2 7.73e-54 172 45 0 183 3 syd Protein Syd Aliivibrio fischeri (strain MJ11)
B6EGG8 8.83e-54 172 46 0 182 3 syd Protein Syd Aliivibrio salmonicida (strain LFI1238)
Q5E7A2 2.46e-53 171 44 0 183 3 syd Protein Syd Aliivibrio fischeri (strain ATCC 700601 / ES114)
B7VIV3 1.05e-50 164 46 2 179 3 syd Protein Syd Vibrio atlanticus (strain LGP32)
A1SYB4 2.61e-35 125 36 3 182 3 syd Protein Syd Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)
Q47YB4 9.6e-34 121 39 5 188 3 syd Protein Syd Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
C4L9Z4 8.56e-30 111 41 1 142 3 syd Protein Syd Tolumonas auensis (strain DSM 9187 / NBRC 110442 / TA 4)
Q15QZ0 3.32e-29 109 31 2 186 3 syd Protein Syd Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)
Q085G3 2.21e-26 103 36 4 183 3 syd Protein Syd Shewanella frigidimarina (strain NCIMB 400)
Q12P27 2.55e-26 102 34 2 183 3 syd Protein Syd Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
B4RVQ6 6.32e-24 95 35 4 180 3 syd Protein Syd Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype)
A3D2I7 1e-23 96 37 1 148 3 syd Protein Syd Shewanella baltica (strain OS155 / ATCC BAA-1091)
B8E7T6 1.44e-23 95 37 0 133 3 syd Protein Syd Shewanella baltica (strain OS223)
A6WL87 1.57e-23 95 37 0 133 3 syd Protein Syd Shewanella baltica (strain OS185)
A9KUI6 3.48e-23 94 36 1 148 3 syd Protein Syd Shewanella baltica (strain OS195)
A1S4M2 6.04e-23 94 33 2 174 3 syd Protein Syd Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Q3IIT1 1.15e-22 92 35 1 143 3 syd Protein Syd Pseudoalteromonas translucida (strain TAC 125)
A3QGC1 2.78e-22 92 34 3 183 3 syd Protein Syd Shewanella loihica (strain ATCC BAA-1088 / PV-4)
A0KHE8 6.68e-22 90 33 4 187 3 syd Protein Syd Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
A4Y525 1e-21 90 35 1 148 3 syd Protein Syd Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
A1RLP5 1.02e-21 90 35 1 148 3 syd Protein Syd Shewanella sp. (strain W3-18-1)
B8CQA4 2.06e-21 90 35 1 145 3 syd Protein Syd Shewanella piezotolerans (strain WP3 / JCM 13877)
Q8EGJ3 5.01e-21 89 37 2 140 3 syd Protein Syd Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
Q0HT43 3.35e-20 87 37 1 148 3 syd Protein Syd Shewanella sp. (strain MR-7)
A8H6N2 1.19e-19 85 34 3 146 3 syd Protein Syd Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
A0KZ42 1.83e-19 85 37 1 148 3 syd Protein Syd Shewanella sp. (strain ANA-3)
Q0HGT6 2.73e-19 84 36 1 148 3 syd Protein Syd Shewanella sp. (strain MR-4)
A4SQJ8 8.11e-19 82 30 2 181 3 syd Protein Syd Aeromonas salmonicida (strain A449)
B0TPA0 1.16e-18 82 34 3 150 3 syd Protein Syd Shewanella halifaxensis (strain HAW-EB4)
Q2SKR7 1.82e-18 81 31 3 158 3 syd Protein Syd Hahella chejuensis (strain KCTC 2396)
Q5QW09 2.8e-15 73 33 2 133 3 syd Protein Syd Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_08270
Feature type CDS
Gene syd
Product SecY-interacting protein
Location 179214 - 179765 (strand: 1)
Length 552 (nucleotides) / 183 (amino acids)

Contig

Accession ZDB_364
Length 217237 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1070
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF07348 Syd protein (SUKH-2)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K15723 SecY interacting protein Syd - -

Protein Sequence

MTRTVSQALHQFTRHYVGLWQEKTGLPPISHDLYGIPSPCIIRTGDECVYWEPAEFTADKHLQPVEKALDIQLHPDISEFYTQQFAGDMQAVFEDIQLSLVQVWSEDDFIRLQENLIGHLVTQRRLKLPPTQFIATLESEFDMISVCNLSGEVILETFGTTKRRVLAADTASFLSQLTAVCTA

Flanking regions ( +/- flanking 50bp)

ATACGTTACTATAGCGGCATGATACTTTTATGTTTAACAGGTTTTGCGATATGACCCGCACAGTTTCTCAGGCGTTACATCAGTTTACCCGGCATTATGTCGGTTTATGGCAGGAAAAAACAGGTTTACCGCCGATCAGTCACGATCTTTATGGTATTCCTTCCCCGTGTATTATCCGCACCGGTGATGAATGTGTGTACTGGGAGCCGGCGGAATTCACCGCAGACAAGCATTTGCAGCCGGTTGAGAAAGCGCTGGATATTCAGCTGCACCCGGATATCAGTGAATTCTACACGCAGCAGTTTGCGGGGGATATGCAGGCTGTTTTTGAGGATATTCAGCTCAGTCTGGTGCAGGTCTGGAGTGAGGATGATTTTATCCGCTTACAGGAAAACCTGATTGGTCATCTGGTCACGCAGCGCCGTCTGAAACTGCCGCCGACACAGTTTATCGCCACACTGGAATCGGAATTTGACATGATTTCTGTCTGTAACCTGAGCGGTGAAGTGATCCTCGAAACGTTCGGTACCACAAAGCGCCGGGTGCTGGCGGCGGATACGGCATCATTCCTGTCACAGCTGACGGCGGTATGCACAGCATAAATATCACTGACAGCGGTGTGGGATTTTACCGGTGATGGCTGTAATACGGT