Homologs in group_1070

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06060 FBDBKF_06060 81.4 Morganella morganii S1 syd SecY-interacting protein
EHELCC_09105 EHELCC_09105 81.4 Morganella morganii S2 syd SecY-interacting protein
NLDBIP_09485 NLDBIP_09485 81.4 Morganella morganii S4 syd SecY-interacting protein
LHKJJB_08270 LHKJJB_08270 81.4 Morganella morganii S3 syd SecY-interacting protein
HKOGLL_07820 HKOGLL_07820 81.4 Morganella morganii S5 syd SecY-interacting protein
PMI_RS11335 PMI_RS11335 58.2 Proteus mirabilis HI4320 syd SecY-interacting protein

Distribution of the homologs in the orthogroup group_1070

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1070

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
B2VFX0 5.1e-70 213 58 0 174 3 syd Protein Syd Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
B1JQF2 5.07e-69 210 55 0 177 3 syd Protein Syd Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q667I1 5.07e-69 210 55 0 177 3 syd Protein Syd Yersinia pseudotuberculosis serotype I (strain IP32953)
A4TLA1 5.07e-69 210 55 0 177 3 syd Protein Syd Yersinia pestis (strain Pestoides F)
Q1CFD6 5.07e-69 210 55 0 177 3 syd Protein Syd Yersinia pestis bv. Antiqua (strain Nepal516)
A9R2J4 5.07e-69 210 55 0 177 3 syd Protein Syd Yersinia pestis bv. Antiqua (strain Angola)
Q8CZY7 5.07e-69 210 55 0 177 3 syd Protein Syd Yersinia pestis
B2JZ43 5.07e-69 210 55 0 177 3 syd Protein Syd Yersinia pseudotuberculosis serotype IB (strain PB1/+)
Q1CAP5 5.07e-69 210 55 0 177 3 syd Protein Syd Yersinia pestis bv. Antiqua (strain Antiqua)
A1JP93 7.77e-69 210 56 0 177 3 syd Protein Syd Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
A7FFG1 2.73e-68 209 55 0 177 3 syd Protein Syd Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
P60155 5.06e-67 205 57 1 176 3 syd Protein Syd Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q83QD1 4e-66 203 55 0 177 3 syd Protein Syd Shigella flexneri
Q3YY63 5.74e-66 202 55 0 177 3 syd Protein Syd Shigella sonnei (strain Ss046)
Q31XJ7 5.74e-66 202 55 0 177 3 syd Protein Syd Shigella boydii serotype 4 (strain Sb227)
Q1R7P9 5.74e-66 202 55 0 177 3 syd Protein Syd Escherichia coli (strain UTI89 / UPEC)
B1LQY6 5.74e-66 202 55 0 177 3 syd Protein Syd Escherichia coli (strain SMS-3-5 / SECEC)
B6I6J1 5.74e-66 202 55 0 177 3 syd Protein Syd Escherichia coli (strain SE11)
P0A8U0 5.74e-66 202 55 0 177 1 syd Protein Syd Escherichia coli (strain K12)
B1IU48 5.74e-66 202 55 0 177 3 syd Protein Syd Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
P0A8U1 5.74e-66 202 55 0 177 3 syd Protein Syd Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TE65 5.74e-66 202 55 0 177 3 syd Protein Syd Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1AEY0 5.74e-66 202 55 0 177 3 syd Protein Syd Escherichia coli O1:K1 / APEC
A8A3S8 5.74e-66 202 55 0 177 3 syd Protein Syd Escherichia coli O9:H4 (strain HS)
B1XDK2 5.74e-66 202 55 0 177 3 syd Protein Syd Escherichia coli (strain K12 / DH10B)
C4ZZU8 5.74e-66 202 55 0 177 3 syd Protein Syd Escherichia coli (strain K12 / MC4100 / BW2952)
B7LXK9 5.74e-66 202 55 0 177 3 syd Protein Syd Escherichia coli O8 (strain IAI1)
B7NVU1 5.74e-66 202 55 0 177 3 syd Protein Syd Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B7LEX3 5.74e-66 202 55 0 177 3 syd Protein Syd Escherichia coli (strain 55989 / EAEC)
B7MLB4 5.74e-66 202 55 0 177 3 syd Protein Syd Escherichia coli O45:K1 (strain S88 / ExPEC)
B7UHK9 5.74e-66 202 55 0 177 3 syd Protein Syd Escherichia coli O127:H6 (strain E2348/69 / EPEC)
A7ZQN6 5.74e-66 202 55 0 177 3 syd Protein Syd Escherichia coli O139:H28 (strain E24377A / ETEC)
B7N727 5.86e-66 202 55 0 177 3 syd Protein Syd Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
C6DAH5 6.12e-66 202 55 0 174 3 syd Protein Syd Pectobacterium carotovorum subsp. carotovorum (strain PC1)
Q6D8F3 7.29e-66 202 55 0 178 3 syd Protein Syd Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
P60084 7.54e-66 202 55 0 178 3 syd Protein Syd Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P60085 7.54e-66 202 55 0 178 3 syd Protein Syd Salmonella typhi
B4TUI6 7.54e-66 202 55 0 178 3 syd Protein Syd Salmonella schwarzengrund (strain CVM19633)
B5BF22 7.54e-66 202 55 0 178 3 syd Protein Syd Salmonella paratyphi A (strain AKU_12601)
C0PXF5 7.54e-66 202 55 0 178 3 syd Protein Syd Salmonella paratyphi C (strain RKS4594)
A9N2H6 7.54e-66 202 55 0 178 3 syd Protein Syd Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PEK1 7.54e-66 202 55 0 178 3 syd Protein Syd Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B4T4W0 7.54e-66 202 55 0 178 3 syd Protein Syd Salmonella newport (strain SL254)
B4TG15 7.54e-66 202 55 0 178 3 syd Protein Syd Salmonella heidelberg (strain SL476)
B5RDU5 7.54e-66 202 55 0 178 3 syd Protein Syd Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5QWQ1 7.54e-66 202 55 0 178 3 syd Protein Syd Salmonella enteritidis PT4 (strain P125109)
Q57KF0 7.54e-66 202 55 0 178 3 syd Protein Syd Salmonella choleraesuis (strain SC-B67)
B5F4R1 7.54e-66 202 55 0 178 3 syd Protein Syd Salmonella agona (strain SL483)
B7MZ89 9.59e-66 202 54 0 177 3 syd Protein Syd Escherichia coli O81 (strain ED1a)
B5Z3F8 1.55e-65 201 55 0 177 3 syd Protein Syd Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8X6T2 1.55e-65 201 55 0 177 3 syd Protein Syd Escherichia coli O157:H7
Q0T1Q9 7.82e-65 200 54 0 177 3 syd Protein Syd Shigella flexneri serotype 5b (strain 8401)
B2TZE0 7.82e-65 200 54 0 177 3 syd Protein Syd Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
A9MSB6 9.94e-65 199 54 0 178 3 syd Protein Syd Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
Q32CC5 2.07e-64 199 54 0 177 3 syd Protein Syd Shigella dysenteriae serotype 1 (strain Sd197)
A8AP01 6.51e-64 197 54 0 177 3 syd Protein Syd Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
B7LVU6 6.73e-64 197 55 0 178 3 syd Protein Syd Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
A7MR09 3.39e-63 196 53 0 178 3 syd Protein Syd Cronobacter sakazakii (strain ATCC BAA-894)
A4WDY0 1.62e-62 194 55 0 172 3 syd Protein Syd Enterobacter sp. (strain 638)
A6TD66 1.49e-61 191 53 0 177 3 syd Protein Syd Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
B5XV06 8.64e-60 187 53 0 177 3 syd Protein Syd Klebsiella pneumoniae (strain 342)
C5BHA8 7.4e-59 185 50 1 177 3 syd Protein Syd Edwardsiella ictaluri (strain 93-146)
Q9KTJ9 2.6e-55 176 48 0 177 3 syd Protein Syd Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
B6EGG8 7.34e-55 174 48 0 173 3 syd Protein Syd Aliivibrio salmonicida (strain LFI1238)
Q87RS5 9.65e-54 172 48 2 177 3 syd Protein Syd Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
P60156 2.33e-53 171 44 0 177 3 syd Protein Syd Vibrio vulnificus (strain YJ016)
Q8DFB9 2.33e-53 171 44 0 177 3 syd Protein Syd Vibrio vulnificus (strain CMCP6)
A7MYB9 3.37e-52 167 48 2 179 3 syd Protein Syd Vibrio campbellii (strain ATCC BAA-1116)
B5FAU2 1.58e-50 164 45 0 173 3 syd Protein Syd Aliivibrio fischeri (strain MJ11)
Q5E7A2 5.28e-50 162 44 0 173 3 syd Protein Syd Aliivibrio fischeri (strain ATCC 700601 / ES114)
B7VIV3 7.43e-50 162 46 2 179 3 syd Protein Syd Vibrio atlanticus (strain LGP32)
Q6LN11 7.08e-48 157 44 0 177 3 syd Protein Syd Photobacterium profundum (strain SS9)
C4L9Z4 4.98e-33 119 42 1 158 3 syd Protein Syd Tolumonas auensis (strain DSM 9187 / NBRC 110442 / TA 4)
Q47YB4 1.33e-32 118 38 3 187 3 syd Protein Syd Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
A1SYB4 4.16e-32 117 37 1 142 3 syd Protein Syd Psychromonas ingrahamii (strain DSM 17664 / CCUG 51855 / 37)
Q15QZ0 2.76e-30 112 31 2 179 3 syd Protein Syd Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)
B4RVQ6 9.5e-25 97 34 4 180 3 syd Protein Syd Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype)
Q085G3 2.5e-23 95 33 2 177 3 syd Protein Syd Shewanella frigidimarina (strain NCIMB 400)
Q12P27 2.64e-23 95 33 2 181 3 syd Protein Syd Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
Q3IIT1 6.47e-23 93 33 1 173 3 syd Protein Syd Pseudoalteromonas translucida (strain TAC 125)
A0KHE8 1.07e-22 92 34 2 178 3 syd Protein Syd Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
A3D2I7 9.71e-22 90 33 2 175 3 syd Protein Syd Shewanella baltica (strain OS155 / ATCC BAA-1091)
B8E7T6 3.18e-21 89 35 0 133 3 syd Protein Syd Shewanella baltica (strain OS223)
A6WL87 3.24e-21 89 35 0 133 3 syd Protein Syd Shewanella baltica (strain OS185)
A9KUI6 3.42e-21 89 33 2 175 3 syd Protein Syd Shewanella baltica (strain OS195)
A4SQJ8 4.55e-21 88 33 2 178 3 syd Protein Syd Aeromonas salmonicida (strain A449)
A1S4M2 1.31e-20 87 30 2 175 3 syd Protein Syd Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Q8EGJ3 6.86e-20 86 33 2 175 3 syd Protein Syd Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
A3QGC1 6.97e-20 86 32 2 178 3 syd Protein Syd Shewanella loihica (strain ATCC BAA-1088 / PV-4)
Q5QW09 1.59e-19 84 35 4 153 3 syd Protein Syd Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
A4Y525 1.68e-19 85 30 2 175 3 syd Protein Syd Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
A1RLP5 1.7e-19 85 30 2 175 3 syd Protein Syd Shewanella sp. (strain W3-18-1)
B8CQA4 1.7e-19 85 33 1 142 3 syd Protein Syd Shewanella piezotolerans (strain WP3 / JCM 13877)
A8H6N2 2.26e-19 84 31 3 172 3 syd Protein Syd Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
Q0HT43 2.87e-19 84 33 2 175 3 syd Protein Syd Shewanella sp. (strain MR-7)
Q2SKR7 3.76e-18 80 32 2 146 3 syd Protein Syd Hahella chejuensis (strain KCTC 2396)
B0TPA0 4.35e-18 81 31 3 176 3 syd Protein Syd Shewanella halifaxensis (strain HAW-EB4)
Q0HGT6 5.06e-18 81 33 2 175 3 syd Protein Syd Shewanella sp. (strain MR-4)
A0KZ42 1.21e-17 80 33 2 175 3 syd Protein Syd Shewanella sp. (strain ANA-3)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS15845
Feature type CDS
Gene syd
Product SecY-interacting protein
Location 176391 - 176942 (strand: 1)
Length 552 (nucleotides) / 183 (amino acids)

Contig

Accession term accessions NZ_VXKB01000005 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 213534 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1070
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF07348 Syd protein (SUKH-2)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K15723 SecY interacting protein Syd - -

Protein Sequence

MTRMVSQALHQFTQHYVGLCQEKTGLAPVSYELYSIPSPCIIRTGDECVYWMPAAFTADLHLQPVENALEIEVHPDAVQYYTQQFAGDMQANFEGLPLSLVQVWSEDDFIRLQENLIGHLVTQRRLKLPPTLFIATLASEFDIISVCNLSGEVLLETFGTKKRRVLAADIATFLSLLTVEFTA

Flanking regions ( +/- flanking 50bp)

ATACGTTACTATAGCGATATGGCACACTTATTTTTATCAGGTTTTGCGAAATGACCCGAATGGTTTCTCAGGCGTTACATCAGTTTACCCAACATTATGTCGGTTTATGTCAGGAAAAAACAGGCTTAGCGCCGGTCAGTTATGAACTTTACAGTATTCCGTCTCCGTGTATTATTCGTACAGGTGATGAGTGCGTGTACTGGATGCCGGCAGCATTCACGGCTGATCTGCATTTACAGCCGGTTGAAAATGCGCTGGAAATTGAAGTGCATCCGGATGCGGTGCAATATTATACACAGCAGTTCGCCGGGGATATGCAGGCGAACTTTGAGGGACTGCCGCTCAGCCTGGTACAGGTCTGGAGTGAAGACGATTTTATCCGTCTTCAGGAAAACCTGATAGGTCACCTGGTGACACAGCGGCGTCTCAAGCTTCCGCCGACCCTGTTTATCGCCACGCTGGCGTCAGAGTTTGACATAATTTCTGTCTGCAACCTGAGCGGGGAAGTTCTCCTGGAAACATTCGGTACTAAAAAACGCCGGGTGCTTGCTGCGGATATTGCCACATTTCTTTCGCTGTTAACCGTTGAATTTACAGCATAACGATAACTGACATCCGTGTGGGATTCTGTCGCTTTATCCGGTGAACTCTG