Homologs in group_1080

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06140 FBDBKF_06140 100.0 Morganella morganii S1 amiC N-acetylmuramoyl-L-alanine amidase AmiC
EHELCC_09185 EHELCC_09185 100.0 Morganella morganii S2 amiC N-acetylmuramoyl-L-alanine amidase AmiC
NLDBIP_09565 NLDBIP_09565 100.0 Morganella morganii S4 amiC N-acetylmuramoyl-L-alanine amidase AmiC
HKOGLL_07740 HKOGLL_07740 100.0 Morganella morganii S5 amiC N-acetylmuramoyl-L-alanine amidase AmiC
F4V73_RS15775 F4V73_RS15775 94.7 Morganella psychrotolerans amiC N-acetylmuramoyl-L-alanine amidase AmiC
PMI_RS11405 PMI_RS11405 74.5 Proteus mirabilis HI4320 amiC N-acetylmuramoyl-L-alanine amidase AmiC

Distribution of the homologs in the orthogroup group_1080

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1080

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P63883 0.0 605 70 2 417 1 amiC N-acetylmuramoyl-L-alanine amidase AmiC Escherichia coli (strain K12)
P63884 0.0 605 70 2 417 3 amiC N-acetylmuramoyl-L-alanine amidase AmiC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q9K0V3 5.98e-137 401 51 7 408 1 amiC N-acetylmuramoyl-L-alanine amidase AmiC Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
P33772 9.71e-75 238 51 3 241 3 amiA N-acetylmuramoyl-L-alanine amidase AmiA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P36548 1.09e-74 237 52 4 242 1 amiA N-acetylmuramoyl-L-alanine amidase AmiA Escherichia coli (strain K12)
P26366 2.05e-58 200 44 1 232 3 amiB N-acetylmuramoyl-L-alanine amidase AmiB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P26365 4.21e-55 191 42 1 225 1 amiB N-acetylmuramoyl-L-alanine amidase AmiB Escherichia coli (strain K12)
P44493 9.12e-49 174 39 2 227 3 amiB Probable N-acetylmuramoyl-L-alanine amidase AmiB Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57638 5.06e-36 135 32 2 235 3 amiB Putative N-acetylmuramoyl-L-alanine amidase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8K908 3.32e-31 122 29 2 222 3 amiB Putative N-acetylmuramoyl-L-alanine amidase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
Q89A33 7.53e-31 120 33 3 222 3 amiB Putative N-acetylmuramoyl-L-alanine amidase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
O32041 5.3e-20 95 28 5 239 3 yrvJ Putative N-acetylmuramoyl-L-alanine amidase YrvJ Bacillus subtilis (strain 168)
Q02114 1.76e-19 94 31 5 224 1 lytC N-acetylmuramoyl-L-alanine amidase LytC Bacillus subtilis (strain 168)
Q5HNS0 6.28e-19 89 28 6 222 3 lytH Probable cell wall amidase LytH Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q8CP02 2e-18 88 28 6 222 3 lytH Probable cell wall amidase LytH Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
P54525 3.33e-18 85 27 4 219 3 yqiI Uncharacterized protein YqiI Bacillus subtilis (strain 168)
Q7A0Q6 2.39e-17 85 27 7 222 3 lytH Probable cell wall amidase LytH Staphylococcus aureus (strain MW2)
O32421 2.39e-17 85 27 7 222 3 lytH Probable cell wall amidase LytH Staphylococcus aureus
Q6G8T7 2.39e-17 85 27 7 222 3 lytH Probable cell wall amidase LytH Staphylococcus aureus (strain MSSA476)
Q7A588 2.39e-17 85 27 7 222 3 lytH Probable cell wall amidase LytH Staphylococcus aureus (strain N315)
Q7A2R2 2.39e-17 85 27 7 222 3 lytH Probable cell wall amidase LytH Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HFD1 2.39e-17 85 27 7 222 3 lytH Probable cell wall amidase LytH Staphylococcus aureus (strain COL)
Q2YT98 2.39e-17 85 27 7 222 3 lytH Probable cell wall amidase LytH Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q2FXU3 2.39e-17 85 27 7 222 1 lytH Probable cell wall amidase LytH Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FG95 2.39e-17 85 27 7 222 3 lytH Probable cell wall amidase LytH Staphylococcus aureus (strain USA300)
Q49Y70 1.19e-16 83 25 5 222 3 lytH Probable cell wall amidase LytH Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q4L6X7 2.23e-15 79 24 5 222 3 lytH Probable cell wall amidase LytH Staphylococcus haemolyticus (strain JCSC1435)
Q9RMZ0 3.42e-14 77 28 5 225 3 pXO2-42 Uncharacterized cell wall amidase pXO2-42/BXB0045/GBAA_pXO2_0045 Bacillus anthracis
Q06320 8.79e-14 74 27 5 210 1 cwlC Sporulation-specific N-acetylmuramoyl-L-alanine amidase Bacillus subtilis (strain 168)
O48471 3.94e-13 72 28 5 215 4 25 Endolysin Bacillus phage SPP1
P37134 9.07e-09 59 25 5 210 3 cwlM N-acetylmuramoyl-L-alanine amidase CwlM Bacillus licheniformis
P50864 3.54e-05 48 27 7 253 1 cwlD Germination-specific N-acetylmuramoyl-L-alanine amidase Bacillus subtilis (strain 168)
I6Y4D2 0.000181 46 23 10 246 1 Rv3717 N-acetylmuramoyl-L-alanine amidase Rv3717 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_08190
Feature type CDS
Gene amiC
Product N-acetylmuramoyl-L-alanine amidase AmiC
Location 166547 - 167797 (strand: 1)
Length 1251 (nucleotides) / 416 (amino acids)

Contig

Accession ZDB_364
Length 217237 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1080
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01520 N-acetylmuramoyl-L-alanine amidase
PF11741 AMIN domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0860 Cell wall/membrane/envelope biogenesis (M) M N-acetylmuramoyl-L-alanine amidase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01448 N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28] Cationic antimicrobial peptide (CAMP) resistance -

Protein Sequence

MSHSEHDASRRLLLKGAAAFCLLSISPFGFAASSQIVAVRIWPASSYTRVTIESDHPLKYKQFSLQNPERIVVDLKNVHLNSVLKGMDKQVQDRDPHLKLIRVGQNDPQTVRLVFEVKQAMSPQVLELTPVAEFKNRLVLDFYPKNGAATEDDPLLALLEDYNRGDLEESLPRETPKPGKAGQDRPVVIMIDPGHGGEDPGAIGKYKTREKDVVLQIARRLKSLIDREPGMRAYMTRNEDVFIPLSVRVAKARKMRADLFVSIHADAFTNRSARGSSVFALSTRGATSNTAKYLAQTQNDADKIGGVSKSGDKYLDQTMFDMVQSASIKDSLKFGSEVLKRMGNVNKLHKRTVDQAGFAVLKAPDIPSILVETAFISNLEEERLLKTAKFQQEMANSIFLGIKAYFANGGAVARRN

Flanking regions ( +/- flanking 50bp)

TAACCCGCACCGGTTATTGTTGATTTGATTTACGCTATGGATATTTTTTCATGAGTCATTCTGAACATGATGCGTCGCGCCGTCTGTTACTGAAAGGAGCTGCGGCGTTTTGTCTGCTGAGTATCAGCCCGTTCGGCTTTGCGGCGTCGTCACAGATTGTGGCGGTGCGTATCTGGCCGGCATCCAGTTATACCCGTGTGACTATTGAGTCGGATCATCCGCTGAAATATAAGCAGTTTTCACTGCAAAACCCGGAACGTATTGTTGTCGATCTGAAAAATGTGCACCTCAACAGTGTGCTGAAAGGGATGGATAAGCAGGTGCAGGATCGCGATCCGCATCTGAAGCTGATCCGTGTCGGTCAGAATGATCCGCAGACTGTCCGCCTGGTGTTTGAAGTGAAACAGGCGATGAGCCCGCAGGTGCTGGAACTGACCCCGGTCGCTGAGTTTAAAAACCGTCTGGTGCTTGATTTTTATCCGAAAAATGGTGCTGCGACAGAAGACGATCCTCTGCTGGCACTGCTGGAAGATTACAACCGCGGTGATCTCGAAGAAAGCCTGCCGCGTGAAACACCGAAACCGGGTAAAGCCGGTCAGGACAGGCCGGTCGTTATTATGATTGACCCGGGCCACGGCGGGGAAGATCCCGGCGCTATCGGGAAATACAAAACCCGCGAAAAAGATGTGGTGTTGCAGATTGCCCGCCGCCTGAAGTCGCTTATCGATCGTGAGCCGGGTATGCGTGCCTATATGACGCGCAACGAGGATGTGTTTATCCCGCTGTCGGTGCGTGTGGCGAAGGCCCGTAAAATGCGGGCGGATCTGTTTGTCTCAATCCATGCGGATGCCTTTACCAACCGCTCTGCCAGAGGTTCGTCGGTCTTTGCGCTTTCGACGCGCGGGGCAACCAGTAATACCGCAAAATATCTGGCTCAGACCCAGAACGATGCGGATAAAATCGGGGGCGTCAGCAAAAGCGGCGACAAATACCTCGACCAGACCATGTTTGATATGGTGCAGAGTGCGAGTATCAAAGACAGCCTTAAATTCGGTTCAGAAGTGCTGAAACGGATGGGAAATGTCAACAAACTGCATAAGCGCACGGTTGATCAGGCAGGGTTTGCGGTGCTGAAAGCACCGGATATTCCGTCGATTCTGGTGGAAACGGCGTTTATCAGTAACCTTGAGGAAGAGCGTCTGCTGAAAACGGCCAAATTCCAGCAGGAGATGGCAAATTCTATTTTCCTGGGGATTAAGGCGTATTTTGCCAACGGCGGGGCTGTCGCACGACGCAACTGAAAATACGGTTTATCACAGAAATTGTGCATCACAAGGATGTGGTGTGAAAC