Homologs in group_2623

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03855 FBDBKF_03855 100.0 Morganella morganii S1 ypjF Toxin YpjF
EHELCC_06680 EHELCC_06680 100.0 Morganella morganii S2 ypjF Toxin YpjF
NLDBIP_07005 NLDBIP_07005 100.0 Morganella morganii S4 ypjF Toxin YpjF
HKOGLL_04390 HKOGLL_04390 100.0 Morganella morganii S5 ypjF Toxin YpjF
PMI_RS12630 PMI_RS12630 100.0 Proteus mirabilis HI4320 - TA system toxin CbtA family protein

Distribution of the homologs in the orthogroup group_2623

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2623

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q46953 8.88e-11 57 38 1 77 1 ypjF Toxin YpjF Escherichia coli (strain K12)
P77692 7.18e-10 54 35 2 82 1 ykfI Toxin YkfI Escherichia coli (strain K12)
P64524 5.58e-08 50 47 0 51 1 cbtA Cytoskeleton-binding toxin CbtA Escherichia coli (strain K12)
P64525 5.58e-08 50 47 0 51 3 cbtA Toxin CbtA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_06540
Feature type CDS
Gene ypjF
Product Toxin YpjF
Location 34938 - 35237 (strand: 1)
Length 300 (nucleotides) / 99 (amino acids)

Contig

Accession ZDB_363
Length 233386 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2623
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF06755 CbtA_toxin of type IV toxin-antitoxin system

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K18837 cytoskeleton-binding toxin CbtA and related proteins - -

Protein Sequence

MNKMTIIRFQLLVHQLLQVHYGITLSDTGLSDDAEVSRMIELGISPVSVVNRLVDKYHLDKLNASCYLPASPYVSDSDALLAQAQLSGAINPDVMPDNP

Flanking regions ( +/- flanking 50bp)

AGTTTTTACTGAATGAGGCCGCATCCCGACAGGCCGCGTAGGAGACTGCGATGAACAAAATGACCATTATCCGCTTTCAGTTACTGGTACATCAGTTACTGCAAGTGCATTACGGCATTACGCTGAGTGATACCGGATTGTCCGATGATGCTGAGGTGTCCCGGATGATTGAACTCGGGATATCGCCGGTATCGGTGGTCAACCGTCTGGTGGATAAGTACCACCTGGATAAACTGAATGCATCCTGTTATCTGCCGGCATCCCCGTATGTCAGTGACAGCGATGCCTTACTTGCACAGGCTCAGCTGAGCGGTGCCATTAACCCGGATGTCATGCCGGATAATCCTTAACGATTAACGACTGACATCTTTCCCGTGAGGGCTTGTTCCTCACGGGATAA