Homologs in group_2932

Help

5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14395 FBDBKF_14395 100.0 Morganella morganii S1 dsdX D-serine transporter DsdX
EHELCC_07885 EHELCC_07885 100.0 Morganella morganii S2 dsdX D-serine transporter DsdX
NLDBIP_08210 NLDBIP_08210 100.0 Morganella morganii S4 dsdX D-serine transporter DsdX
HKOGLL_04860 HKOGLL_04860 100.0 Morganella morganii S5 dsdX D-serine transporter DsdX
PMI_RS00895 PMI_RS00895 84.7 Proteus mirabilis HI4320 dsdX D-serine transporter DsdX

Distribution of the homologs in the orthogroup group_2932

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_2932

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P08555 0.0 702 77 0 445 1 dsdX D-serine transporter DsdX Escherichia coli (strain K12)
A0A0H2VAP9 0.0 700 77 0 445 1 dsdX D-serine transporter DsdX Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q9ZIJ1 3.16e-87 276 39 4 441 3 gnuT Gluconate permease Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P12012 3.49e-86 273 37 6 450 3 gntP Gluconate permease Bacillus subtilis (strain 168)
Q9Z670 4.43e-85 270 35 4 435 3 gntP Gluconate permease Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
P39344 1.71e-83 266 34 5 435 1 idnT Gnt-II system L-idonate transporter Escherichia coli (strain K12)
P39835 2.43e-79 255 35 4 437 1 gntT High-affinity gluconate transporter Escherichia coli (strain K12)
O31862 8.73e-79 254 36 4 427 3 yojA Uncharacterized permease YojA Bacillus subtilis (strain 168)
P46832 7.84e-78 252 35 8 429 3 gntP Gluconate permease Bacillus licheniformis
P39357 2.55e-66 222 33 7 429 3 yjhF Uncharacterized permease YjhF Escherichia coli (strain K12)
P0AC94 5.59e-66 221 31 4 439 1 gntP High-affinity gluconate transporter Escherichia coli (strain K12)
P0AC95 5.59e-66 221 31 4 439 3 gntP High-affinity gluconate transporter Escherichia coli O157:H7
P0AC96 3.14e-58 200 32 5 437 1 gntU Low-affinity gluconate transporter Escherichia coli (strain K12)
P0AC97 3.14e-58 200 32 5 437 3 gntU Low-affinity gluconate transporter Escherichia coli O157:H7
P71364 1.26e-47 173 29 9 442 3 HI_1015 Uncharacterized permease HI_1015 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q46892 1.96e-43 161 30 8 430 1 ygbN Inner membrane permease YgbN Escherichia coli (strain K12)
P0A3F7 8.54e-33 121 79 0 72 5 dsdX Putative D-serine transporter DsdX-like protein Shigella flexneri
P0A3F6 8.54e-33 121 79 0 72 5 dsdX Putative D-serine transporter DsdX-like protein Escherichia coli O157:H7
Q57493 5.06e-05 48 23 8 330 3 HI_0092 Uncharacterized transporter HI_0092 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_06055
Feature type CDS
Gene dsdX
Product D-serine transporter DsdX
Location 220396 - 221733 (strand: -1)
Length 1338 (nucleotides) / 445 (amino acids)

Contig

Accession ZDB_362
Length 257361 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2932
Orthogroup size 6
N. genomes 6

Actions

Genomic region

Domains

PF02447 GntP family permease

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2610 Carbohydrate transport and metabolism (G) G H+/gluconate symporter GntT or related permease, GntP/DsdX family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K13629 D-serine transporter - -

Protein Sequence

MDSVMWMIGTLVFSILLIIISIIKFKFHPFLALLLTSFFVGIAMNMEPQDMVSAIENGIGGTLGFLAAIIGLGTILGKMMEISGAAERIGITLEKCRWLSPDVTMILIGLICGITLFVEVGVVLLIPLAFSIAKKTNTSLLKLAIPLCTALMAVHCIIPPHPAALFVTNELGADIGTVIVAGLVVGLVASLIGGPLFLKFLGDRLPFKVVPAAFADLKVREEKDLPSLGAALFTVLLPIVLILIKTTADLNMSKDSPLFIFLQFIGNPITAMFIAAFAAYYVLGIRRNMGMSVLLSKTEESFSSIANILLIIGAGGAFNGILKGSGLSDSLALVLSGIDIHPILLAWLVAIILHAAVGSATVAMMGATAIVAPLMPLYPHISPEIMTLAIGSGAIGCTIVTDSLFWLVKQYCNATLAETFRYYSVATLIASVVALAGTFALSYVI

Flanking regions ( +/- flanking 50bp)

ATATTTATTATCCAATGAATGCACAACAACAATATAACCAGGGGTAGGATATGGACTCTGTAATGTGGATGATCGGCACGCTGGTTTTCAGTATCTTGCTGATTATTATTTCAATTATTAAATTTAAGTTTCACCCGTTTTTAGCACTGCTGCTCACCAGCTTTTTTGTCGGTATCGCCATGAATATGGAACCGCAGGATATGGTCAGCGCCATCGAAAACGGGATTGGCGGGACACTCGGATTTTTGGCGGCCATTATCGGACTGGGAACCATACTCGGGAAGATGATGGAAATATCCGGCGCTGCTGAGCGAATCGGGATCACGCTGGAAAAATGCCGCTGGTTAAGTCCCGATGTCACCATGATATTGATCGGCCTTATTTGTGGTATCACACTGTTTGTCGAAGTCGGGGTTGTATTACTGATCCCGCTGGCATTTTCGATTGCCAAAAAAACAAATACCTCATTATTAAAACTGGCGATTCCGTTATGTACGGCGCTGATGGCCGTACACTGCATTATTCCGCCGCATCCTGCTGCGTTATTTGTCACCAATGAACTCGGCGCGGATATCGGAACGGTGATAGTGGCCGGGTTAGTGGTGGGGCTGGTTGCATCGCTGATTGGCGGGCCGCTGTTCCTGAAATTTTTGGGGGATCGTTTACCGTTCAAAGTTGTACCGGCCGCGTTTGCTGACCTGAAAGTCCGTGAAGAAAAAGATTTACCCTCATTAGGCGCGGCGTTATTTACGGTTCTGCTGCCGATTGTGCTCATACTGATAAAAACAACCGCTGATTTAAACATGAGCAAAGATAGCCCGTTATTCATCTTTTTACAGTTTATCGGTAATCCGATAACTGCGATGTTTATCGCCGCTTTTGCCGCTTATTACGTATTGGGTATCCGCCGGAATATGGGAATGAGCGTCCTGCTCAGCAAAACAGAAGAAAGTTTTAGTTCGATTGCGAATATCTTGTTGATTATCGGGGCGGGAGGTGCATTTAACGGCATCCTGAAAGGCAGCGGGCTGAGTGATTCTCTGGCACTGGTGCTGTCCGGTATCGATATACACCCGATTTTACTTGCCTGGCTGGTGGCTATCATTCTTCATGCCGCAGTCGGATCAGCAACGGTCGCCATGATGGGCGCGACTGCAATCGTGGCTCCGCTGATGCCGCTGTACCCGCACATCAGCCCTGAAATTATGACGCTGGCTATCGGCTCCGGGGCAATCGGCTGCACCATTGTGACTGATTCCTTATTCTGGCTGGTGAAACAATATTGTAATGCCACGCTGGCGGAAACATTCCGTTATTACAGTGTCGCCACGCTGATTGCATCCGTTGTCGCGCTGGCCGGCACCTTTGCACTTTCCTATGTGATTTAAAAGAGAGTAATGATGACTCAGATTAATATTGAAAAGTTAATTGCTGACTA