Homologs in group_2898

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5 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12415 FBDBKF_12415 46.1 Morganella morganii S1 - Helix-turn-helix domain-containing protein
FBDBKF_13210 FBDBKF_13210 100.0 Morganella morganii S1 - XRE family transcriptional regulator
EHELCC_08885 EHELCC_08885 100.0 Morganella morganii S2 - XRE family transcriptional regulator
NLDBIP_09210 NLDBIP_09210 100.0 Morganella morganii S4 - XRE family transcriptional regulator
HKOGLL_05860 HKOGLL_05860 100.0 Morganella morganii S5 - XRE family transcriptional regulator

Distribution of the homologs in the orthogroup group_2898

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2898

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q79S39 2.36e-09 57 42 1 68 4 s087 HTH-type transcriptional regulator for conjugative element SXT Vibrio cholerae
Q8GJK1 2.36e-09 57 42 1 68 4 None HTH-type transcriptional regulator for conjugative element pMERPH Shewanella putrefaciens
Q79RI9 2.36e-09 57 42 1 68 4 ORF-96 HTH-type transcriptional regulator for conjugative element R391 Providencia rettgeri
Q06553 2.18e-08 54 49 2 75 2 prtR HTH-type transcriptional regulator PrtR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q37906 3.78e-07 50 46 1 64 4 CI Repressor protein CI Pseudomonas phage D3
P16117 1.1e-05 45 38 1 67 1 CI Repressor protein CI (Fragment) Enterobacteria phage 434
Q47587 0.000505 42 37 1 70 4 rdgA HTH-type transcriptional regulator RdgA Pectobacterium carotovorum subsp. carotovorum
P03036 0.000807 39 38 1 65 1 CRO Regulatory protein cro Enterobacteria phage 434

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_05055
Feature type CDS
Gene -
Product XRE family transcriptional regulator
Location 12519 - 12971 (strand: 1)
Length 453 (nucleotides) / 150 (amino acids)

Contig

Accession ZDB_362
Length 257361 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2898
Orthogroup size 6
N. genomes 5

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MYTNEDILNECQKAQLLVKLYEFSKENGELSENEDALSVRMIAEIINSITTTATAPQKPDALNDVTPSHSSFPQRLKHAMKAAGLTQKELAERAGVSQGFVSKLATGKTTDSRNIYIKLIADALGVSFGWLHYGTGEMYPTNFSADNREV

Flanking regions ( +/- flanking 50bp)

GGTTACATTTAAATCATGGAAACAAAAGTATCATTGAGGGCATCAAAAAAATGTACACAAATGAAGATATTTTGAACGAATGCCAAAAAGCTCAGCTTTTGGTTAAGTTGTATGAGTTCAGCAAAGAAAATGGTGAGTTGAGTGAAAATGAAGATGCGCTATCTGTACGCATGATCGCAGAAATTATCAATTCAATCACTACTACCGCAACGGCACCGCAAAAACCAGATGCGCTGAATGATGTCACACCATCACACAGCAGCTTCCCGCAGCGCTTAAAACACGCCATGAAAGCGGCAGGATTAACACAGAAAGAACTGGCAGAACGCGCTGGGGTATCGCAGGGATTCGTTAGCAAGCTTGCCACAGGAAAAACCACTGACTCACGCAATATCTACATCAAACTGATTGCTGATGCGCTGGGGGTAAGTTTTGGCTGGCTGCATTACGGAACCGGCGAAATGTACCCTACTAATTTTTCCGCCGATAACCGTGAGGTTTAAAAAATGCCGATTATACATTGTATGTCAAATAGCGATGTGTCAGAAGTGGA