Orthogroup:group_2898



Homologs in group_2898

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6 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_12415 FBDBKF_12415 Morganella morganii S1 - Helix-turn-helix domain-containing protein
FBDBKF_13210 FBDBKF_13210 Morganella morganii S1 - XRE family transcriptional regulator
EHELCC_08885 EHELCC_08885 Morganella morganii S2 - XRE family transcriptional regulator
NLDBIP_09210 NLDBIP_09210 Morganella morganii S4 - XRE family transcriptional regulator
LHKJJB_05055 LHKJJB_05055 Morganella morganii S3 - XRE family transcriptional regulator
HKOGLL_05860 HKOGLL_05860 Morganella morganii S5 - XRE family transcriptional regulator

Distribution of group_2898 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2898 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2898

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_2898.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 6

Product

# Product Occurence
1 Helix-turn-helix domain-containing protein 1
2 XRE family transcriptional regulator 5

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1396 6 K Transcription (K) Transcriptional regulator, contains XRE-family HTH domain

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01381 6 Helix-turn-helix

Annotations of the 8 SwissProt hits

Annotation Number of occurrences
HTH-type transcriptional regulator PrtR 1
HTH-type transcriptional regulator RdgA 1
HTH-type transcriptional regulator for conjugative element R391 1
HTH-type transcriptional regulator for conjugative element SXT 1
HTH-type transcriptional regulator for conjugative element pMERPH 1
Regulatory protein cro 1
Repressor protein CI 1
Repressor protein CI (Fragment) 1

Protein length

Min length 150
Max length 220
Mean length (sd) 161.7 (28.6)
Median length 150.0

Protein length distribution