Homologs in group_3386

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13175 FBDBKF_13175 100.0 Morganella morganii S1 - NYN domain-containing protein
EHELCC_08920 EHELCC_08920 100.0 Morganella morganii S2 - NYN domain-containing protein
NLDBIP_09245 NLDBIP_09245 100.0 Morganella morganii S4 - NYN domain-containing protein
HKOGLL_05895 HKOGLL_05895 100.0 Morganella morganii S5 - NYN domain-containing protein

Distribution of the homologs in the orthogroup group_3386

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3386

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_05020
Feature type CDS
Gene -
Product NYN domain-containing protein
Location 6621 - 7382 (strand: -1)
Length 762 (nucleotides) / 253 (amino acids)

Contig

Accession ZDB_362
Length 257361 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3386
Orthogroup size 5
N. genomes 5

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Genomic region

Domains

PF01936 NYN domain
PF12872 OST-HTH/LOTUS domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1432 General function prediction only (R) R NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation

Protein Sequence

MERDNKKIAVLIDADNAQASVLESILNEVSLMGDATVKRIYGDFTNQQSSCWKSILQKNAIKPVQQFAYTTGKNATDGTLIIDAMDLLYTQRFDAFCLVSSDSDFTGLALRIRESGLDVVGFGELKTPMAFRNACNKFINTEIYKDKQESFTSDKRPRTAVESTELIPKEEIFETLLDIANNLSDADEEWIHLGVLGGIMTKRKPDFDARNYGYRNLSTMMKSRPDLFEVKKGAEIGISTAAHLPYMKTKVKE

Flanking regions ( +/- flanking 50bp)

GCATTGTTACATCCAGAAAATGAATCCAGCTATATGGAAGATGATAAATAATGGAAAGAGATAATAAAAAAATTGCAGTTTTGATTGATGCAGATAATGCACAGGCGTCAGTGTTAGAAAGTATTCTTAATGAAGTTTCATTAATGGGAGATGCTACAGTTAAACGGATTTACGGTGACTTCACTAACCAACAAAGTTCATGTTGGAAATCTATTTTGCAAAAAAATGCAATTAAACCAGTTCAGCAGTTTGCATACACAACAGGAAAAAATGCAACTGATGGGACATTAATCATAGATGCAATGGATTTATTATATACTCAAAGATTTGATGCATTTTGTTTGGTATCTAGTGATAGCGACTTTACTGGATTGGCATTGCGGATAAGAGAGTCAGGCCTCGATGTTGTCGGATTCGGTGAGCTGAAAACACCAATGGCATTCAGAAATGCGTGCAATAAATTTATTAATACAGAAATATATAAAGATAAACAAGAATCATTTACTTCGGATAAAAGACCAAGAACAGCCGTTGAGTCGACTGAATTAATACCTAAAGAAGAAATATTTGAGACGTTATTAGATATAGCAAATAATCTCTCTGATGCAGATGAAGAATGGATTCACCTTGGTGTTCTGGGGGGGATCATGACTAAGAGAAAGCCTGATTTTGATGCAAGAAATTACGGATACCGAAATTTATCAACTATGATGAAAAGTAGGCCTGATCTTTTTGAGGTCAAAAAAGGTGCCGAAATTGGTATATCCACTGCTGCCCACCTCCCTTATATGAAGACAAAAGTAAAGGAGTGAAAGACATAGAATTATTTGCTTTTTGCATAAAATTGCCTTATTATCTCCAA