Homologs in group_509

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01040 FBDBKF_01040 100.0 Morganella morganii S1 bamB outer membrane protein assembly factor BamB
EHELCC_00505 EHELCC_00505 100.0 Morganella morganii S2 bamB outer membrane protein assembly factor BamB
NLDBIP_02955 NLDBIP_02955 100.0 Morganella morganii S4 bamB outer membrane protein assembly factor BamB
LHKJJB_04470 LHKJJB_04470 100.0 Morganella morganii S3 bamB outer membrane protein assembly factor BamB
F4V73_RS07115 F4V73_RS07115 87.4 Morganella psychrotolerans bamB outer membrane protein assembly factor BamB
PMI_RS09090 PMI_RS09090 68.5 Proteus mirabilis HI4320 bamB outer membrane protein assembly factor BamB

Distribution of the homologs in the orthogroup group_509

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_509

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7CJM5 0.0 542 64 1 393 3 bamB Outer membrane protein assembly factor BamB Yersinia pestis
Q32D50 2.19e-167 476 60 2 378 3 bamB Outer membrane protein assembly factor BamB Shigella dysenteriae serotype 1 (strain Sd197)
P77774 7.12e-167 475 60 2 378 1 bamB Outer membrane protein assembly factor BamB Escherichia coli (strain K12)
H9L451 2.92e-166 473 59 2 378 3 bamB Outer membrane protein assembly factor BamB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
F7XXL0 3.46e-124 367 47 2 372 3 bamB Outer membrane protein assembly factor BamB Moranella endobia (strain PCIT)
Q5E769 8.09e-116 345 42 2 387 3 bamB Outer membrane protein assembly factor BamB Aliivibrio fischeri (strain ATCC 700601 / ES114)
Q9KTW8 5.52e-109 328 41 2 387 3 bamB Outer membrane protein assembly factor BamB Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q8EC35 4.13e-100 305 40 3 386 3 bamB Outer membrane protein assembly factor BamB Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
F5ZAY7 1.24e-86 271 37 2 370 3 bamB Outer membrane protein assembly factor BamB Alteromonas naphthalenivorans
C7R5S3 2.69e-77 246 35 3 381 3 bamB Outer membrane protein assembly factor BamB Kangiella koreensis (strain DSM 16069 / KCTC 12182 / SW-125)
E4PKG3 1.33e-62 209 32 2 373 3 bamB Outer membrane protein assembly factor BamB Marinobacter adhaerens (strain DSM 23420 / HP15)
Q5X521 6.59e-60 201 31 5 389 3 bamB Outer membrane protein assembly factor BamB Legionella pneumophila (strain Paris)
Q5X521 3.39e-05 49 30 2 100 3 bamB Outer membrane protein assembly factor BamB Legionella pneumophila (strain Paris)
Q9HXJ7 6.96e-60 201 34 6 379 1 bamB Outer membrane protein assembly factor BamB Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q8P980 2.35e-59 201 34 4 397 3 bamB Outer membrane protein assembly factor BamB Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25)
Q0A984 1.55e-55 190 34 1 361 3 bamB Outer membrane protein assembly factor BamB Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1)
C6BGE7 6.04e-54 186 33 8 371 3 bamB Outer membrane protein assembly factor BamB Ralstonia pickettii (strain 12D)
Q63UT0 7.06e-53 183 32 6 372 3 bamB Outer membrane protein assembly factor BamB Burkholderia pseudomallei (strain K96243)
Q7VWL3 6.48e-49 172 32 7 387 3 bamB Outer membrane protein assembly factor BamB Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
Q5NIB1 3.09e-46 167 26 6 396 3 bamB Outer membrane protein assembly factor BamB Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)
Q0AE45 3.64e-45 163 30 3 326 3 bamB Outer membrane protein assembly factor BamB Nitrosomonas eutropha (strain DSM 101675 / C91 / Nm57)
G4Q9J6 1.02e-38 145 27 5 394 3 bamB Outer membrane protein assembly factor BamB Taylorella asinigenitalis (strain MCE3)
F8GAQ8 7.44e-37 143 22 7 395 3 bamB Outer membrane protein assembly factor BamB Francisella salina
Q9ZDU2 2.11e-09 62 20 3 260 4 RP232 Uncharacterized protein RP232 Rickettsia prowazekii (strain Madrid E)
Q92IV6 3.12e-08 58 20 3 260 4 RC0314 Uncharacterized protein RC0314 Rickettsia conorii (strain ATCC VR-613 / Malish 7)
P54741 4.82e-07 55 31 3 122 1 afsK Serine/threonine-protein kinase AfsK Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P54741 4.43e-05 49 26 8 232 1 afsK Serine/threonine-protein kinase AfsK Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P54741 0.000893 45 24 12 331 1 afsK Serine/threonine-protein kinase AfsK Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q9RRH3 1.43e-05 50 26 8 302 1 rqkA DNA damage-responsive serine/threonine-protein kinase RqkA Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
Q80WC9 5.52e-05 49 24 8 236 1 Aasdh Beta-alanine-activating enzyme Mus musculus
Q4L235 6.92e-05 48 19 4 179 1 AASDH Beta-alanine-activating enzyme Homo sapiens
Q60282 8.23e-05 48 21 15 322 4 MJECL23 Uncharacterized protein MJECL23 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q60282 0.001 45 23 7 185 4 MJECL23 Uncharacterized protein MJECL23 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q5RG49 0.00015 47 21 10 301 3 aasdh Beta-alanine-activating enzyme Danio rerio
O05542 0.000181 47 23 10 264 1 adhA Alcohol dehydrogenase (quinone), dehydrogenase subunit Gluconobacter oxydans (strain 621H)
G8YXZ9 0.000231 47 20 10 307 1 tth1 Tetrathionate hydrolase Acidianus ambivalens
B7J3C9 0.000276 46 21 9 298 1 tth Tetrathionate hydrolase Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / CIP 104768 / NCIMB 8455)
Q9RTJ3 0.000328 46 26 11 246 1 DR_1769 Desiccation/radiation resistance protein DR_1769 Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
P77931 0.000459 46 21 14 360 1 pvaA Polyvinylalcohol dehydrogenase Pseudomonas sp.

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_02575
Feature type CDS
Gene bamB
Product outer membrane protein assembly factor BamB
Location 119156 - 120328 (strand: 1)
Length 1173 (nucleotides) / 390 (amino acids)

Contig

Accession ZDB_680
Length 282413 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_509
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF13360 PQQ-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1520 Cell wall/membrane/envelope biogenesis (M) M Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K17713 outer membrane protein assembly factor BamB - -

Protein Sequence

MQLRKTLLVGLVASVLLAGCSSEQDTIVMSPLPEVTSQFTPETVWDKSVGDGVGKYYSHLSPAWEGSSVYAADRNGLVKALDTDSGVEIWSVNLAEKTGFLSADIPAMLSGGLTVSGEHVYVGTERGTLIALNANDGEIAWTANAGGEVLSRPEVSDGLVLVHTGNGLLQAFDTASGEQRWSLNLDTPSLSVRGESAPAVAMGAAFVGGDNGRVSAVMLGQGQIIWQQRISQTTGTTEISRLNDVDMTPVVADGRVYAIAYNGNLVAMDMRSGQILWKRDFGSVNELVLDGESLYVVDQDDNVYGLRAADGVTMWSQDKLLHRNLSAPEIFNGYLVVGDGEGYLHWLDTSNGQFVAQNKLNSSGILSRPSIAGDKLMVQARDGRLYLLRR

Flanking regions ( +/- flanking 50bp)

GTTATGACATTCAAACTCGATAACTTAGCCGGGTGAGGGGACTCTCGATAATGCAACTGCGTAAAACACTGCTGGTAGGATTAGTCGCCTCTGTGCTGCTGGCCGGCTGTTCAAGTGAACAGGATACTATCGTGATGTCACCACTGCCGGAAGTGACAAGTCAGTTCACCCCGGAAACCGTGTGGGATAAATCCGTCGGTGACGGTGTCGGTAAATACTATTCTCACCTTTCCCCGGCATGGGAAGGATCCAGTGTCTATGCGGCTGACCGCAATGGCCTGGTCAAAGCCCTGGATACCGATTCCGGTGTTGAAATCTGGTCAGTAAATCTGGCGGAAAAAACCGGTTTCTTATCCGCGGATATCCCGGCGATGTTATCCGGCGGTCTGACCGTTTCCGGTGAACACGTTTATGTGGGTACAGAGCGCGGTACGCTGATCGCCCTGAACGCGAACGACGGTGAAATCGCATGGACCGCCAACGCCGGTGGTGAAGTACTGTCCCGTCCGGAAGTCAGTGACGGACTGGTGCTGGTGCATACCGGTAACGGCCTGTTACAGGCATTTGATACCGCGTCCGGCGAACAGCGCTGGAGCCTGAACCTGGATACCCCGAGCCTGTCTGTCCGTGGTGAATCTGCTCCGGCCGTGGCCATGGGGGCAGCATTTGTCGGTGGCGACAACGGTCGTGTCAGTGCGGTTATGCTTGGCCAGGGTCAGATTATCTGGCAGCAGCGTATTTCCCAGACAACCGGTACCACCGAAATCAGCCGTCTGAATGACGTGGATATGACCCCGGTTGTTGCTGACGGCCGCGTTTACGCTATCGCGTATAACGGCAATCTGGTGGCGATGGATATGCGCAGCGGACAAATCCTGTGGAAACGCGATTTCGGTTCAGTTAACGAACTGGTGCTGGATGGCGAATCCCTCTATGTTGTTGACCAGGATGATAACGTCTATGGCCTGCGTGCAGCGGATGGCGTTACCATGTGGTCACAGGATAAATTACTGCACCGTAATCTTTCCGCACCGGAAATCTTTAACGGCTATCTGGTGGTGGGTGACGGTGAAGGTTATCTCCACTGGTTGGATACCTCTAACGGACAGTTCGTGGCGCAGAATAAACTGAACAGTTCCGGTATTCTCAGCCGTCCGTCGATTGCCGGTGATAAACTGATGGTGCAGGCCCGTGACGGACGCCTGTACCTGCTCCGCCGCTGACAGTAAACCGCTGTTTCCGGCATCACTTCGCCAGGGTAACTGACTGCGGA