Homologs in group_2247

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_01705 EHELCC_01705 100.0 Morganella morganii S2 rfaF ADP-heptose:LPS heptosyltransferase
NLDBIP_01755 NLDBIP_01755 100.0 Morganella morganii S4 rfaF ADP-heptose:LPS heptosyltransferase
LHKJJB_00280 LHKJJB_00280 100.0 Morganella morganii S3 rfaF ADP-heptose:LPS heptosyltransferase
HKOGLL_00320 HKOGLL_00320 100.0 Morganella morganii S5 rfaF ADP-heptose:LPS heptosyltransferase
F4V73_RS05940 F4V73_RS05940 63.3 Morganella psychrotolerans - glycosyltransferase family 9 protein
PMI_RS15685 PMI_RS15685 41.9 Proteus mirabilis HI4320 - glycosyltransferase family 9 protein

Distribution of the homologs in the orthogroup group_2247

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2247

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q0P9A8 4e-12 70 23 11 302 3 waaF Lipooligosaccharide heptosyltransferase 2 Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
P45042 2.31e-11 67 31 2 120 3 waaF Lipooligosaccharide heptosyltransferase 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37421 5.51e-11 66 28 5 168 3 waaF Lipopolysaccharide heptosyltransferase 2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P37692 6.71e-10 63 28 5 157 1 waaF Lipopolysaccharide heptosyltransferase 2 Escherichia coli (strain K12)
P0DX62 3.94e-08 57 21 11 302 3 waaF Lipooligosaccharide heptosyltransferase 2 Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)
P25742 1.14e-06 53 22 13 347 1 waaQ Lipopolysaccharide heptosyltransferase 3 Escherichia coli (strain K12)
Q7VNA4 2.28e-06 52 25 6 160 3 waaF Lipooligosaccharide heptosyltransferase 2 Haemophilus ducreyi (strain 35000HP / ATCC 700724)
O87333 1.04e-05 50 27 4 122 3 waaC Lipopolysaccharide heptosyltransferase 1 Campylobacter coli
Q57336 2.52e-05 49 22 2 115 3 opsX Lipopolysaccharide core heptosyltransferase OpsX Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_17185
Feature type CDS
Gene rfaF
Product ADP-heptose:LPS heptosyltransferase
Location 20421 - 21545 (strand: 1)
Length 1125 (nucleotides) / 374 (amino acids)

Contig

Accession contig_27
Length 46634 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2247
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01075 Glycosyltransferase family 9 (heptosyltransferase)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0859 Cell wall/membrane/envelope biogenesis (M) M ADP-heptose:LPS heptosyltransferase

Protein Sequence

MSKKLKHKLVNLFLQIYTRRRDFSHSVAAFKQLKTIDFRNIVIYSTTALGDFLMNTPAIHEVRKRFPDARITVVSGNKMAPYICTGIGKDWDDVVCWNSKVNTVLKLVRDLKAHGTPDLVLIMHSHNPYDYLSAVMTGAPFVFRCNHPTNPYMERWLTNSTRFAHRHSVQVRLDLITPLGCRFTEKSVEMRVPCEVTKVPSPVRRVGFQMGASSEERRWPVENFVTLARTLLTRYRDLNIVLVGAPNEIRLSDEFLSLLEPEFHNRIEPLIGKTTVEELTQIVNNLDLLVTNDTGTMHLAFALKVPSVSMHVSTCPQFTGPYQDYELHEIISGFASKLLLEEGEHEMASISADTVIEATVKSLSARGILPVSEE

Flanking regions ( +/- flanking 50bp)

ATATGCTAAATTAGCGCCATGCTATTATTGGTTGCTTTTCAGGAAATACGATGTCCAAAAAACTTAAACATAAACTGGTTAATTTATTCTTACAGATTTATACGCGCCGCCGTGATTTTTCGCACTCCGTCGCTGCCTTTAAACAGCTGAAGACTATCGACTTCCGGAATATTGTTATTTATTCGACAACGGCACTCGGGGATTTTCTGATGAATACCCCGGCAATTCATGAAGTCAGAAAGCGTTTTCCTGATGCCAGAATTACCGTTGTTTCCGGTAATAAAATGGCACCTTATATCTGCACCGGTATCGGTAAAGACTGGGACGATGTGGTGTGCTGGAACAGCAAAGTCAATACCGTACTGAAACTGGTCAGGGATTTAAAAGCGCACGGAACACCGGATCTGGTTCTGATTATGCACTCACATAACCCGTATGATTATCTGAGCGCAGTCATGACCGGGGCACCGTTTGTTTTCCGCTGTAATCATCCGACAAACCCGTATATGGAGCGCTGGCTGACAAACTCGACCCGCTTTGCACACCGCCATTCAGTACAGGTCCGCCTTGATCTGATCACTCCGCTCGGCTGCCGGTTTACCGAAAAAAGTGTTGAGATGCGGGTACCGTGTGAGGTCACAAAAGTACCGTCACCGGTAAGACGGGTTGGTTTTCAGATGGGCGCTTCCAGTGAGGAACGACGCTGGCCGGTTGAGAATTTTGTCACACTCGCACGCACTCTGCTTACCCGGTACCGTGACCTGAATATTGTTCTGGTCGGCGCGCCGAATGAAATTCGCCTGTCCGATGAATTTCTCAGTTTACTTGAGCCGGAATTTCACAACCGGATTGAGCCTCTGATCGGTAAAACCACCGTCGAAGAATTAACACAAATCGTAAATAACCTTGATCTTCTGGTCACAAATGACACCGGAACCATGCATCTGGCATTTGCGTTAAAAGTCCCCAGTGTCAGCATGCATGTCAGCACCTGCCCGCAATTCACCGGCCCTTATCAGGACTATGAATTACATGAAATTATTTCCGGGTTTGCCTCAAAATTACTACTGGAAGAGGGAGAGCATGAAATGGCCTCAATTTCTGCGGATACAGTAATTGAAGCAACCGTTAAATCATTATCTGCGCGGGGAATATTGCCGGTATCAGAGGAATAACGCTGCGGAATAATCCTGAGTAAAAGCACGGTCTCACACCCGGCCGTAAA