Homologs in group_2247

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17185 FBDBKF_17185 63.3 Morganella morganii S1 rfaF ADP-heptose:LPS heptosyltransferase
EHELCC_01705 EHELCC_01705 63.3 Morganella morganii S2 rfaF ADP-heptose:LPS heptosyltransferase
NLDBIP_01755 NLDBIP_01755 63.3 Morganella morganii S4 rfaF ADP-heptose:LPS heptosyltransferase
LHKJJB_00280 LHKJJB_00280 63.3 Morganella morganii S3 rfaF ADP-heptose:LPS heptosyltransferase
HKOGLL_00320 HKOGLL_00320 63.3 Morganella morganii S5 rfaF ADP-heptose:LPS heptosyltransferase
PMI_RS15685 PMI_RS15685 41.3 Proteus mirabilis HI4320 - glycosyltransferase family 9 protein

Distribution of the homologs in the orthogroup group_2247

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2247

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P45042 4.26e-13 73 34 2 120 3 waaF Lipooligosaccharide heptosyltransferase 2 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q0P9A8 5.54e-12 69 24 14 332 3 waaF Lipooligosaccharide heptosyltransferase 2 Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
P0DX62 7.06e-11 66 25 17 339 3 waaF Lipooligosaccharide heptosyltransferase 2 Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828)
P37692 7.27e-11 66 28 4 164 1 waaF Lipopolysaccharide heptosyltransferase 2 Escherichia coli (strain K12)
P37421 3.47e-10 64 26 4 175 3 waaF Lipopolysaccharide heptosyltransferase 2 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q7VNA4 1.01e-07 56 30 3 119 3 waaF Lipooligosaccharide heptosyltransferase 2 Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Q57336 3.03e-07 55 25 5 164 3 opsX Lipopolysaccharide core heptosyltransferase OpsX Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9HUF5 6e-05 48 28 5 130 3 waaC Lipopolysaccharide heptosyltransferase 1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05940
Feature type CDS
Gene -
Product glycosyltransferase family 9 protein
Location 1264511 - 1265608 (strand: 1)
Length 1098 (nucleotides) / 365 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2247
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01075 Glycosyltransferase family 9 (heptosyltransferase)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0859 Cell wall/membrane/envelope biogenesis (M) M ADP-heptose:LPS heptosyltransferase

Protein Sequence

MSKKLKHKLAGWFLRCYTRRRDLSHTVSEFKQLQNPDFRNIVIYSTTALGDFLMNTPAIHAVRVRFPDARITVVSSHKMHSYINSGTGKDWDAVIPWNGKIHGVPALVKAINAQGAPDLLLILHSRGPYDYLSAVISGARFIFSCSDTGIPGTERWLTNYLTAFHGHSVQARLDLIAPLGCQFTETSVEMHVPCGVTKTPSDCLRVGFQMGASSEERRWPVHYFVQVALALFALDKKLIIVLFGAPGEIPLGEQFLARLPTQLHHRTELLIGKTSVTELTQAVNNIDALVTGDTGTMHIALALKVPTISLFVSANPCYTGPYQNLEIHQVISGFACPLLMAPGDHEMSAVKAEPVINATIKALTK

Flanking regions ( +/- flanking 50bp)

GGTAACCCCGTCGGCAACCAATTATACGGGTTTAATTTATAAGGAATACCATGTCAAAAAAACTCAAACATAAATTAGCAGGATGGTTCCTCCGGTGTTATACCCGCCGCCGTGATTTGTCACACACTGTCTCTGAATTCAAACAGTTACAAAATCCGGACTTTAGAAATATTGTTATTTACTCTACTACCGCACTCGGTGATTTTCTGATGAACACCCCGGCGATACACGCCGTAAGAGTCCGCTTTCCGGATGCCCGTATTACGGTTGTATCCAGCCACAAAATGCACAGTTACATCAACAGCGGCACCGGTAAAGACTGGGATGCGGTTATCCCGTGGAACGGAAAAATTCATGGCGTGCCCGCACTGGTCAAAGCCATCAACGCACAGGGCGCACCTGATTTACTCCTTATACTCCATTCCCGCGGTCCGTATGATTATCTGAGTGCGGTAATAAGCGGAGCCCGGTTTATATTCAGTTGCTCAGATACCGGGATCCCGGGCACTGAGCGCTGGCTGACAAATTATCTCACGGCATTCCATGGTCATTCTGTTCAGGCACGCCTGGATCTTATTGCCCCGCTTGGCTGTCAATTTACTGAAACCAGTGTTGAGATGCATGTTCCCTGCGGTGTCACAAAAACACCATCAGATTGCCTGCGGGTAGGTTTTCAGATGGGCGCATCAAGTGAAGAGCGCCGCTGGCCGGTTCATTATTTTGTGCAGGTTGCACTGGCGCTGTTTGCCCTGGATAAGAAATTAATAATCGTATTATTCGGCGCACCCGGTGAAATACCGTTAGGTGAGCAATTTTTAGCCCGGTTACCAACACAATTACATCACAGAACAGAATTATTAATCGGAAAAACCTCAGTGACTGAACTGACACAAGCCGTCAATAATATTGATGCGCTGGTTACCGGCGATACCGGGACAATGCATATTGCCCTGGCATTAAAAGTACCGACTATCAGCCTGTTTGTCAGCGCCAATCCCTGTTACACCGGACCTTATCAGAACCTTGAAATACATCAGGTGATTTCCGGGTTTGCCTGCCCGTTACTGATGGCTCCGGGTGACCACGAAATGTCAGCGGTTAAGGCCGAGCCGGTTATTAATGCCACGATTAAGGCGCTTACCAAATAAAATACATATTTACGGTACATAGTGTGTCATAAAATGAGTAACACGCTGTT