Homologs in group_2243

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_01725 EHELCC_01725 100.0 Morganella morganii S2 hdeD HdeD family acid-resistance protein
NLDBIP_01735 NLDBIP_01735 100.0 Morganella morganii S4 hdeD HdeD family acid-resistance protein
LHKJJB_00300 LHKJJB_00300 100.0 Morganella morganii S3 hdeD HdeD family acid-resistance protein
HKOGLL_00340 HKOGLL_00340 100.0 Morganella morganii S5 hdeD HdeD family acid-resistance protein
F4V73_RS05920 F4V73_RS05920 89.5 Morganella psychrotolerans - HdeD family acid-resistance protein
PMI_RS08330 PMI_RS08330 43.2 Proteus mirabilis HI4320 - HdeD family acid-resistance protein

Distribution of the homologs in the orthogroup group_2243

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2243

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AET7 2.37e-39 135 40 0 190 3 hdeD Protein HdeD Shigella flexneri
P0AET5 2.37e-39 135 40 0 190 1 hdeD Protein HdeD Escherichia coli (strain K12)
P0AET6 2.37e-39 135 40 0 190 3 hdeD Protein HdeD Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_17165
Feature type CDS
Gene hdeD
Product HdeD family acid-resistance protein
Location 16749 - 17321 (strand: 1)
Length 573 (nucleotides) / 190 (amino acids)

Contig

Accession contig_27
Length 46634 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2243
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03729 Short repeat of unknown function (DUF308)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3247 General function prediction only (R) R Acid resistance membrane protein HdeD, DUF308 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K21908 membrane protein HdeD - -

Protein Sequence

MLDFNRQNLTHMTADALKKQRGYLWIIAILLLAGGVACLMNPLISGVTLSYIIGGLLLINGISMLFVTLSSRLYSGGSKLFSVLVAVAYLLLGYVFLTEPLTGMLSLAILLAILFIAGGILRLGSGLRQMSQARGWLNIIIGLLDLFIAYLLVGNGPIVSVTLIATLVGIELLFSSFGLIAAASVLKKNN

Flanking regions ( +/- flanking 50bp)

CTGCCCTGCATGCTCTGATACCGCTGTAACGGGCTTACTAAGGAAAAACCATGCTTGATTTTAACCGTCAGAATTTAACTCATATGACAGCCGATGCCCTGAAAAAACAACGGGGCTACCTGTGGATCATCGCCATTCTTCTGCTGGCCGGTGGTGTGGCCTGTCTGATGAACCCGCTGATATCCGGTGTGACTCTCAGCTATATTATCGGGGGGCTTCTCCTGATAAACGGGATCTCCATGTTATTTGTGACACTCAGCAGCCGGCTCTACAGCGGCGGCAGTAAGCTGTTTTCCGTTCTGGTTGCGGTCGCCTATCTCCTTCTGGGTTATGTGTTCCTGACCGAGCCGCTCACCGGGATGCTCAGCCTCGCTATTCTGCTCGCCATTCTGTTTATTGCCGGCGGGATCCTGCGTCTGGGTTCTGGTCTGCGTCAGATGTCTCAGGCACGCGGCTGGCTGAACATTATCATCGGCCTGCTGGATCTGTTTATCGCTTACCTGCTGGTCGGTAACGGCCCGATTGTGTCTGTCACCCTGATTGCAACCCTGGTCGGTATTGAACTGCTGTTCAGCTCTTTCGGACTGATCGCCGCCGCCTCTGTCCTGAAAAAGAATAATTAACCGCATCCGGTGGCGCGGGCAAATAATTTGCCGCGCCACATCCCCCTTTT