Homologs in group_2279

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17165 FBDBKF_17165 89.5 Morganella morganii S1 hdeD HdeD family acid-resistance protein
EHELCC_01725 EHELCC_01725 89.5 Morganella morganii S2 hdeD HdeD family acid-resistance protein
NLDBIP_01735 NLDBIP_01735 89.5 Morganella morganii S4 hdeD HdeD family acid-resistance protein
LHKJJB_00300 LHKJJB_00300 89.5 Morganella morganii S3 hdeD HdeD family acid-resistance protein
HKOGLL_00340 HKOGLL_00340 89.5 Morganella morganii S5 hdeD HdeD family acid-resistance protein
PMI_RS08330 PMI_RS08330 43.2 Proteus mirabilis HI4320 - HdeD family acid-resistance protein

Distribution of the homologs in the orthogroup group_2279

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2279

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AET7 5.33e-39 135 40 0 190 3 hdeD Protein HdeD Shigella flexneri
P0AET5 5.33e-39 135 40 0 190 1 hdeD Protein HdeD Escherichia coli (strain K12)
P0AET6 5.33e-39 135 40 0 190 3 hdeD Protein HdeD Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05920
Feature type CDS
Gene -
Product HdeD family acid-resistance protein
Location 1260785 - 1261357 (strand: 1)
Length 573 (nucleotides) / 190 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2279
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03729 Short repeat of unknown function (DUF308)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3247 General function prediction only (R) R Acid resistance membrane protein HdeD, DUF308 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K21908 membrane protein HdeD - -

Protein Sequence

MLDFNRQNLAQMTADALKKQRGYLWIIAILLLIGGVACLMNPLISGVTLSYIIGGLLLINGISMLFMTLSSRIYSGGSKVFSILVAVAYLLLSYVFLTDPLQGMMSLAILLAILFIAGGILRLGAGLRQFSQPRGWLNLVIGLLDLFIAYLLVGNGPLVSVTLIATLVGIELLFSSFGLIAIASMLKKNS

Flanking regions ( +/- flanking 50bp)

ATTATACTTTGACGTTATGATTTCACATATGGACTTACCAAGGAGAAACCATGCTTGATTTTAATCGTCAGAATTTAGCGCAGATGACCGCTGATGCCCTGAAAAAACAACGGGGCTATTTATGGATTATTGCCATACTGCTTCTTATCGGCGGCGTGGCATGCCTTATGAATCCACTGATTTCCGGGGTAACGCTCAGCTATATTATCGGTGGCCTGCTCCTGATAAACGGAATTTCCATGCTGTTTATGACACTCAGCAGCCGGATTTACAGCGGCGGCAGTAAGGTTTTTTCTATTCTTGTCGCCGTTGCCTATCTTCTGTTGAGTTATGTCTTCCTGACCGATCCGCTGCAAGGCATGATGAGCCTCGCTATTTTGCTGGCTATCCTGTTTATTGCCGGTGGGATCCTGCGCCTGGGTGCAGGTCTGCGTCAGTTTTCGCAGCCGCGCGGCTGGTTAAATCTGGTCATCGGCCTGCTGGATCTGTTCATTGCCTATCTTCTGGTCGGTAATGGTCCGCTGGTTTCTGTCACCCTGATTGCCACCCTGGTGGGTATCGAGCTGCTGTTCAGTTCATTCGGCCTGATTGCGATTGCTTCAATGCTGAAAAAGAACAGTTAATCTCCTGATTGATTTTTTTAGTACATACCGGTGGTGTGACTCAGACAATC