Homologs in group_3754

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
F4V73_RS07850 F4V73_RS07850 56.2 Morganella psychrotolerans cas6f type I-F CRISPR-associated endoribonuclease Cas6/Csy4

Distribution of the homologs in the orthogroup group_3754

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3754

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q1RE32 2.49e-10 60 32 9 202 1 cas6f CRISPR-associated endonuclease Cas6/Csy4 Escherichia coli (strain UTI89 / UPEC)
Q02MM2 0.000243 43 27 7 188 1 cas6f CRISPR-associated endonuclease Cas6/Csy4 Pseudomonas aeruginosa (strain UCBPP-PA14)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_12615
Feature type CDS
Gene cas6f
Product type I-F CRISPR-associated endoribonuclease Cas6/Csy4
Location 38997 - 39554 (strand: -1)
Length 558 (nucleotides) / 185 (amino acids)

Contig

Accession contig_15
Length 114235 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3754
Orthogroup size 2
N. genomes 2

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Genomic region

Domains

PF09618 CRISPR-associated protein (Cas_Csy4)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5935 Defense mechanisms (V) V CRISPR-Cas system endoribonuclease Cas6f/Csy4, RAMP superfamily

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19130 CRISPR-associated endonuclease Csy4 [EC:3.1.-.-] - -

Protein Sequence

MRFYQTITILPDALISAVFLRQQIWRQLHLILAENKTGENSSAVAVAFPDYCRKPQTPGNRLRLLAGDYPSLAELGLSVRLAAFYPYIRLSGILPVPEKTLPVSYIREHVKGLRRSQAAEAGRLFIPETLPFIWTKSLSGGRHHRPFPFFIRKLDAKSAAEGRFTCYGLSQKRTESGRVATVPHF

Flanking regions ( +/- flanking 50bp)

CGTGGCAGTGTTAATTCGCGGCGGTGTTTTCGGTGGCGGAGGGTAAGCGGATGCGATTTTATCAGACAATCACGATTTTGCCGGATGCACTGATATCGGCAGTATTTCTCCGCCAGCAAATCTGGCGGCAGCTTCACCTGATACTGGCAGAGAATAAAACCGGTGAAAACAGCAGTGCTGTTGCTGTCGCATTTCCGGATTACTGCCGCAAGCCGCAGACACCGGGGAACCGTCTGCGGTTGCTGGCCGGGGATTACCCTTCTCTGGCGGAATTGGGGCTCTCTGTACGGTTAGCTGCTTTTTACCCGTATATCCGGTTAAGCGGGATCTTACCTGTACCGGAAAAAACGTTACCAGTCAGTTACATCCGTGAACATGTAAAAGGGTTGCGCCGTTCTCAGGCTGCGGAGGCCGGGCGGTTATTTATTCCGGAAACGCTGCCGTTTATCTGGACGAAATCGCTGTCAGGAGGCAGACATCACCGGCCATTTCCTTTTTTTATCCGGAAACTGGATGCAAAATCTGCCGCAGAAGGGCGGTTTACCTGTTACGGACTGAGTCAAAAAAGGACTGAAAGCGGGAGGGTGGCGACAGTGCCTCACTTTTGAGGTGATTTACTGCCATAACGGCAGCTCAGAAATAATTATGATAAAAAAAT