Homologs in group_3754

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1 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12615 FBDBKF_12615 56.2 Morganella morganii S1 cas6f type I-F CRISPR-associated endoribonuclease Cas6/Csy4

Distribution of the homologs in the orthogroup group_3754

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3754

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q02MM2 4.4e-07 51 26 8 197 1 cas6f CRISPR-associated endonuclease Cas6/Csy4 Pseudomonas aeruginosa (strain UCBPP-PA14)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS07850
Feature type CDS
Gene cas6f
Product type I-F CRISPR-associated endoribonuclease Cas6/Csy4
Location 1641560 - 1642186 (strand: -1)
Length 627 (nucleotides) / 208 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3754
Orthogroup size 2
N. genomes 2

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Genomic region

Domains

PF09618 CRISPR-associated protein (Cas_Csy4)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5935 Defense mechanisms (V) V CRISPR-Cas system endoribonuclease Cas6f/Csy4, RAMP superfamily

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19130 CRISPR-associated endonuclease Csy4 [EC:3.1.-.-] - -

Protein Sequence

MNYYQTITILSEATVSPVFIRQKVWQRIHIALADNKIAKNSSAIAVAFPDYSSREPTPGHRLRLLAMKYDELIKLNITERLAGMSGYIAISPVLPVPEQNIPVSYIREHVKGRARINKDMQLKAVRWAVQTGQSLDICLAALEKSMPRTCTSLPFIRTESCSGQMSYRPFPLFIRRLVFSSSQQGEFTCYGLSHKRAVLSAVATVPHF

Flanking regions ( +/- flanking 50bp)

GTATTGATCCGCGGAGGGGTATTTGGTGAGGGGGATAAATAAAACAGCATATGAATTATTATCAGACTATCACTATATTATCTGAGGCGACTGTCTCTCCGGTATTTATCCGGCAAAAAGTCTGGCAGCGAATACATATTGCGCTGGCTGATAATAAAATAGCAAAAAACAGCAGTGCCATTGCTGTTGCATTTCCTGATTATAGTAGCCGGGAGCCTACACCGGGGCACCGGTTAAGATTGCTGGCAATGAAATATGACGAATTGATAAAACTGAATATAACAGAACGATTAGCGGGTATGTCCGGTTATATTGCAATTAGTCCTGTATTACCTGTGCCGGAGCAAAATATACCGGTCAGCTATATCCGTGAGCATGTTAAAGGGCGGGCGCGTATTAACAAAGATATGCAGTTAAAAGCGGTACGGTGGGCAGTACAAACCGGGCAATCTTTGGATATATGTCTGGCAGCACTGGAAAAATCAATGCCCCGCACCTGTACGTCGCTGCCGTTTATCCGGACAGAATCGTGCTCAGGACAAATGTCATATCGCCCGTTTCCGTTATTTATCAGACGGTTGGTTTTTAGTTCGTCGCAGCAGGGGGAATTTACCTGCTACGGGCTGAGTCATAAGCGTGCTGTGCTTTCTGCTGTTGCGACCGTGCCGCATTTCTGATGATATTTACTGCCACGCAGGCAGCTTAGAAATAATTATGATAGAGAGAT