Homologs in group_2754

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_13510 EHELCC_13510 100.0 Morganella morganii S2 ygfM Aldehyde, CO, or xanthine dehydrogenase, FAD-binding subunit
NLDBIP_13955 NLDBIP_13955 100.0 Morganella morganii S4 ygfM Aldehyde, CO, or xanthine dehydrogenase, FAD-binding subunit
LHKJJB_08895 LHKJJB_08895 100.0 Morganella morganii S3 ygfM Aldehyde, CO, or xanthine dehydrogenase, FAD-binding subunit
HKOGLL_08445 HKOGLL_08445 100.0 Morganella morganii S5 ygfM Aldehyde, CO, or xanthine dehydrogenase, FAD-binding subunit
F4V73_RS13420 F4V73_RS13420 89.9 Morganella psychrotolerans ygfM molybdopterin-dependent oxidoreductase FAD-binding subunit

Distribution of the homologs in the orthogroup group_2754

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2754

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P64557 3.67e-104 305 57 0 257 4 ygfM Uncharacterized protein YgfM Escherichia coli (strain K12)
P64558 3.67e-104 305 57 0 257 4 ygfM Uncharacterized protein YgfM Escherichia coli O157:H7
O32145 3.58e-08 56 32 7 164 2 pucC Probable xanthine dehydrogenase subunit C Bacillus subtilis (strain 168)
Q59127 4.54e-06 50 27 14 267 1 ndhM Nicotine 6-hydroxylase medium subunit Paenarthrobacter nicotinovorans
Q0QLF4 7.86e-06 49 29 3 135 1 ndhF Nicotinate dehydrogenase FAD-subunit Eubacterium barkeri

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_07680
Feature type CDS
Gene ygfM
Product Aldehyde, CO, or xanthine dehydrogenase, FAD-binding subunit
Location 51197 - 51970 (strand: -1)
Length 774 (nucleotides) / 257 (amino acids)

Contig

Accession contig_8
Length 164760 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2754
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00941 FAD binding domain in molybdopterin dehydrogenase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1319 Energy production and conversion (C) C Aldehyde, CO, or xanthine dehydrogenase, FAD-binding subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12529 putative selenate reductase FAD-binding subunit Selenocompound metabolism -

Protein Sequence

MIEQFFRPATLTQATELKQRFQENAVWFAGGSKLNAVPTKTNRTVAISLSLLPLKSIEWQDGILRIGAVVTLETLRESPLIPRALYDALGFVYSRHIRNQATIGGEIAACQREHALLPVLLVLDAQVQLASNDVIPLESYLAAPDDRLITHLILQDPFRRCATRTVRETADGWAVVTAAVALTGNNEQRIAVDGVGCGISRLPQVEAKNLSGEALEKAVSQAVNPKADLLGSEEYKRYITGILVSDLLTDCRQMGEE

Flanking regions ( +/- flanking 50bp)

CATGGCCTGCGGCACTGCCGCAGGCCGGAAGAGCAATGTAGGGGTAACCCATGATCGAACAATTTTTCCGCCCTGCCACCTTAACGCAGGCAACTGAGCTGAAACAACGCTTTCAGGAAAATGCTGTCTGGTTTGCAGGCGGCAGTAAACTGAATGCGGTACCGACCAAAACTAACCGCACTGTCGCTATCTCACTGTCACTGCTGCCGCTGAAGTCCATCGAGTGGCAGGACGGTATTCTGCGCATCGGCGCGGTTGTCACGCTGGAAACACTGCGGGAAAGCCCGCTGATCCCGCGTGCGCTGTATGACGCGCTCGGTTTTGTCTATTCGCGCCATATCCGTAACCAGGCCACCATCGGCGGGGAGATCGCCGCCTGTCAGCGCGAGCATGCGCTGCTGCCGGTGCTGCTGGTGCTGGATGCTCAGGTGCAGCTTGCCAGCAATGATGTGATCCCGCTGGAAAGCTATCTCGCCGCACCGGATGACCGCCTGATCACCCATCTGATTTTACAGGATCCGTTCCGCCGCTGTGCCACCCGTACTGTCCGCGAAACCGCTGACGGCTGGGCTGTGGTCACTGCCGCTGTCGCACTGACCGGTAATAATGAGCAGCGGATCGCCGTTGACGGTGTCGGTTGCGGTATCAGCCGTCTGCCGCAGGTTGAGGCGAAAAATCTCAGCGGGGAAGCGCTGGAGAAAGCCGTCAGTCAGGCCGTGAATCCGAAAGCGGATTTACTGGGCAGCGAAGAATATAAACGCTATATCACCGGAATTTTAGTTTCAGACCTGCTGACAGACTGCCGGCAAATGGGGGAGGAATAAGAAATGAACGTCCATTTTATACTTAACGGCACCCCGCATTCACCCGATTG