Homologs in group_963

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_12285 EHELCC_12285 100.0 Morganella morganii S2 ddpA ABC-type transport system, periplasmic component
NLDBIP_12625 NLDBIP_12625 100.0 Morganella morganii S4 ddpA ABC-type transport system, periplasmic component
LHKJJB_12485 LHKJJB_12485 100.0 Morganella morganii S3 ddpA ABC-type transport system, periplasmic component
HKOGLL_11100 HKOGLL_11100 100.0 Morganella morganii S5 ddpA ABC-type transport system, periplasmic component
F4V73_RS05760 F4V73_RS05760 93.1 Morganella psychrotolerans - ABC transporter substrate-binding protein
PMI_RS07165 PMI_RS07165 72.7 Proteus mirabilis HI4320 - ABC transporter substrate-binding protein

Distribution of the homologs in the orthogroup group_963

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_963

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76128 8e-40 154 28 16 519 2 ddpA Probable D,D-dipeptide-binding periplasmic protein DdpA Escherichia coli (strain K12)
Q0TJL8 3.97e-18 90 23 13 484 3 gsiB Glutathione-binding protein GsiB Escherichia coli O6:K15:H31 (strain 536 / UPEC)
Q1RE95 5.05e-18 90 23 12 484 3 gsiB Glutathione-binding protein GsiB Escherichia coli (strain UTI89 / UPEC)
Q8CW88 5.05e-18 90 23 12 484 3 gsiB Glutathione-binding protein GsiB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
A1A968 5.05e-18 90 23 12 484 3 gsiB Glutathione-binding protein GsiB Escherichia coli O1:K1 / APEC
Q8X6V9 6.49e-18 90 23 12 484 3 gsiB Glutathione-binding protein GsiB Escherichia coli O157:H7
Q32IB6 8.72e-18 89 23 12 484 3 gsiB Glutathione-binding protein GsiB Shigella dysenteriae serotype 1 (strain Sd197)
Q323W4 1.29e-17 89 23 12 484 3 gsiB Glutathione-binding protein GsiB Shigella boydii serotype 4 (strain Sb227)
Q5PGP4 1.52e-17 89 24 11 416 3 gsiB Glutathione-binding protein GsiB Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8Z863 2.02e-17 88 24 11 416 3 gsiB Glutathione-binding protein GsiB Salmonella typhi
P23847 2.24e-17 88 21 12 474 1 dppA Dipeptide-binding protein Escherichia coli (strain K12)
Q821B3 2.64e-17 88 23 12 484 3 gsiB Glutathione-binding protein GsiB Shigella flexneri
Q8ZQM3 2.74e-17 88 24 11 416 3 gsiB Glutathione-binding protein GsiB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q57RB1 2.92e-17 88 24 11 416 3 gsiB Glutathione-binding protein GsiB Salmonella choleraesuis (strain SC-B67)
Q3Z3V3 3.49e-17 87 23 12 484 3 gsiB Glutathione-binding protein GsiB Shigella sonnei (strain Ss046)
Q6D3B0 4.09e-17 87 22 12 466 3 gsiB Glutathione-binding protein GsiB Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
P75797 1.16e-16 86 23 12 484 1 gsiB Glutathione-binding protein GsiB Escherichia coli (strain K12)
Q0T6D2 2.93e-16 85 23 13 486 3 gsiB Glutathione-binding protein GsiB Shigella flexneri serotype 5b (strain 8401)
P33950 2.66e-15 82 22 11 477 1 hbpA Heme-binding protein A Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A0A0H2ZGV7 1.39e-14 80 21 12 458 1 dppA4 Di/tripeptide-binding protein 4 Pseudomonas aeruginosa (strain UCBPP-PA14)
Q9HVS4 1.29e-12 73 21 15 460 1 PA4497 Tripeptide-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H2ZGW2 1.44e-12 73 21 15 460 1 dppA2 Di/tripeptide-binding protein 2 Pseudomonas aeruginosa (strain UCBPP-PA14)
Q9HVS1 2.24e-12 73 22 17 510 1 PA4500 Dipeptide-binding protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
A0A0H2ZI72 3.75e-12 72 20 12 459 1 dppA5 Probable di/tripeptide-binding protein 5 Pseudomonas aeruginosa (strain UCBPP-PA14)
P26906 7.9e-12 71 23 18 514 1 dppE Dipeptide-binding protein DppE Bacillus subtilis (strain 168)
A0A0H2ZGN2 2.11e-11 70 22 19 524 1 dppA3 Di/tripeptide-binding protein 3 Pseudomonas aeruginosa (strain UCBPP-PA14)
Q47622 5.39e-11 68 22 12 454 3 sapA Probable ABC transporter periplasmic-binding protein SapA Escherichia coli (strain K12)
A0A0H2ZGV2 1.13e-09 64 21 18 516 1 dppA1 Di/tripeptide-binding protein 1 Pseudomonas aeruginosa (strain UCBPP-PA14)
P36634 1.44e-09 64 23 17 478 2 sapA Peptide transport periplasmic protein SapA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77348 2.36e-09 63 26 14 320 1 mppA Periplasmic murein peptide-binding protein MppA Escherichia coli (strain K12)
P45285 3.77e-09 62 21 7 323 3 sapA Peptide transport periplasmic protein SapA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P42061 4.71e-09 62 22 17 445 1 appA Oligopeptide-binding protein AppA Bacillus subtilis (strain 168)
Q8FW84 4.84e-09 62 24 7 289 3 BRA0576 Putative binding protein BRA0576/BS1330_II0571 Brucella suis biovar 1 (strain 1330)
Q8FUX2 1.13e-08 61 24 14 370 3 BRA1090 Putative peptide-binding periplasmic protein BRA1090/BS1330_II1082 Brucella suis biovar 1 (strain 1330)
Q8YDG6 1.43e-08 60 24 14 370 3 BMEII0210 Putative peptide-binding periplasmic protein BMEII0210 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q8YC41 3.48e-08 59 23 7 289 3 BMEII0691 Putative binding protein BMEII0691 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q2YKJ5 3.67e-08 59 23 7 289 3 BAB2_0664 Putative binding protein BAB2_0664 Brucella abortus (strain 2308)
Q577X5 3.67e-08 59 23 7 289 3 BruAb2_0648 Putative binding protein BruAb2_0648 Brucella abortus biovar 1 (strain 9-941)
Q2YJK2 6.04e-08 58 23 14 367 3 BAB2_1049 Putative peptide-binding periplasmic protein BAB2_1049 Brucella abortus (strain 2308)
Q8VQK3 6.04e-08 58 23 14 367 3 BruAb2_1030 Putative peptide-binding periplasmic protein BruAb2_1030 Brucella abortus biovar 1 (strain 9-941)
P71370 9.86e-08 58 22 17 553 3 oppA Periplasmic oligopeptide-binding protein OppA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A2RI74 1.74e-07 57 24 18 444 1 dppA Dipeptide-binding protein Lactococcus lactis subsp. cremoris (strain MG1363)
A9CIN5 2.27e-07 57 24 12 309 3 yepA Peptidoglycan-binding protein YepA Agrobacterium fabrum (strain C58 / ATCC 33970)
P33590 3.27e-07 56 23 15 439 1 nikA Nickel-binding periplasmic protein Escherichia coli (strain K12)
P55691 1.08e-05 52 22 7 292 3 NGR_a00920 Uncharacterized protein y4wM Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q46863 0.000556 46 22 9 296 1 ygiS Probable deoxycholate-binding periplasmic protein YgiS Escherichia coli (strain K12)
Q8FWN7 0.000656 46 20 10 342 3 BRA0409 Putative ABC transporter peptide-binding protein BRA0409/BS1330_II0406 Brucella suis biovar 1 (strain 1330)
Q2YK66 0.000656 46 20 10 342 3 BAB2_0812 Putative ABC transporter peptide-binding protein BAB2_0812 Brucella abortus (strain 2308)
Q577J8 0.000656 46 20 10 342 3 BruAb2_0792 Putative ABC transporter peptide-binding protein BruAb2_0792 Brucella abortus biovar 1 (strain 9-941)
A5VU91 0.000656 46 20 10 342 3 BOV_A0352 Putative ABC transporter peptide-binding protein BOV_A0352 Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)
Q8YBP0 0.000662 46 20 10 342 3 BMEII0859 Putative ABC transporter peptide-binding protein BMEII0859 Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
Q2FVE7 0.00079 45 19 15 501 1 cntA Metal-staphylopine-binding protein CntA Staphylococcus aureus (strain NCTC 8325 / PS 47)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_05305
Feature type CDS
Gene ddpA
Product ABC-type transport system, periplasmic component
Location 67802 - 69370 (strand: 1)
Length 1569 (nucleotides) / 522 (amino acids)

Contig

Accession contig_5
Length 181448 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_963
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0747 Amino acid transport and metabolism (E) E ABC-type transport system, periplasmic component

Protein Sequence

MKKTYPAASLALLFSVSAFAATPPNTLIVVQSLDDIVSLDPAESNELSSIQTVPSLYQRLVQPNRDNPEQLDAILLEDWQADAANKTLTVRIKENAKFASGNPVRPEDIIFSYQRAVVMNKSPAFILNILGWNKENIAQQFEKTGDRTLKIKWSADISPDVALNLLSTPIASVVDEKLVTPNIKNNDFGNAWLKMHSAGSGAYSLKVYQPNQAIVMASNPHVSTGEAKIPSIIIKNVPDPASRRLLIQQGDADIARELGADQTAALKNSAGVRVENIPSAEQDYMAFNTGNSANPLLKNPALWEAARYLVDYEGITRDLLKGQYFIHQSFLPVGLPGALENNPYKFDPAKAKEILANAGIKDAHFTLDVENKPPYITIAQSLQASFAQGGIKVELLPAAGSQVYSRVRARQHQAAIRFWIPDYFDAHSNASAFAFNDGKSSTVAWLNGWDIPQLSQTTLKAVAEPDKAKRAQMYTAMQEELQRSSPYVFMAQGQNQVVLRDNVKGYQQGLNADMVYYDRVTK

Flanking regions ( +/- flanking 50bp)

ACGTGTCAGTATTACAAAAAATCAATAACACCGCGTTTCAGGGGAAATATATGAAAAAAACATATCCGGCAGCGTCACTGGCTCTGCTCTTTTCCGTCTCCGCATTTGCCGCCACACCACCGAATACCTTAATTGTTGTCCAGAGCCTGGATGATATTGTCAGTCTGGATCCGGCAGAAAGTAATGAACTGTCCAGTATCCAGACCGTTCCCAGCTTATATCAGCGCCTGGTACAGCCGAACCGTGATAATCCGGAGCAGCTTGACGCTATCCTGCTGGAAGACTGGCAGGCCGATGCCGCCAATAAAACCCTGACCGTCCGGATTAAAGAGAATGCAAAATTTGCCTCCGGCAACCCGGTACGCCCGGAAGATATTATCTTCTCTTACCAGCGCGCTGTGGTCATGAATAAATCGCCTGCGTTTATTCTCAATATTCTTGGCTGGAATAAAGAGAATATCGCGCAGCAGTTTGAAAAAACCGGCGACCGCACCCTGAAAATAAAATGGAGTGCGGATATCAGCCCGGATGTGGCACTGAATCTGTTATCTACCCCGATAGCCTCGGTGGTGGATGAAAAACTGGTGACACCGAATATTAAAAATAATGACTTCGGTAATGCCTGGCTGAAAATGCATTCTGCCGGCAGCGGTGCTTACTCCCTGAAGGTCTATCAGCCAAACCAGGCGATTGTGATGGCCTCTAACCCGCATGTCTCCACCGGCGAGGCGAAAATCCCGTCCATTATTATTAAAAACGTGCCGGATCCGGCTTCCCGCCGTCTGCTGATTCAGCAGGGTGATGCGGATATTGCCCGTGAACTGGGTGCTGACCAGACTGCGGCACTGAAAAACAGCGCCGGGGTACGGGTGGAAAATATTCCGTCCGCCGAGCAGGATTATATGGCGTTCAACACCGGCAACAGCGCCAATCCGCTGCTGAAAAACCCGGCATTGTGGGAAGCGGCCCGTTATCTGGTGGATTATGAAGGCATTACCCGCGATCTACTGAAAGGCCAGTATTTTATTCATCAGAGCTTCCTGCCGGTCGGTTTACCGGGCGCGCTGGAAAATAACCCGTATAAATTTGATCCGGCCAAAGCCAAAGAGATTCTGGCAAACGCCGGGATTAAAGATGCCCATTTCACCCTCGATGTGGAAAACAAGCCACCGTATATCACTATAGCTCAATCACTTCAGGCCAGTTTTGCGCAAGGCGGTATCAAAGTGGAATTATTACCGGCGGCGGGCAGCCAGGTCTATTCCCGCGTACGGGCACGCCAGCATCAGGCGGCTATCCGTTTCTGGATCCCAGACTATTTTGATGCCCATTCCAACGCCAGCGCCTTCGCCTTTAATGACGGCAAGAGCAGCACCGTTGCGTGGCTGAACGGCTGGGATATTCCTCAGTTATCACAAACCACGCTGAAAGCGGTCGCTGAGCCGGATAAAGCCAAACGTGCGCAAATGTATACCGCCATGCAGGAAGAATTACAGCGCAGTTCTCCGTATGTCTTTATGGCACAGGGACAAAACCAGGTGGTACTGCGTGACAATGTGAAAGGCTATCAGCAGGGACTGAACGCTGACATGGTGTATTACGACAGAGTCACCAAATAATCTGCTGATTTTCCGGTTATCACCCCGTCAGTATCGCTGACGGGGTTTGT