Homologs in group_2676

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
EHELCC_06230 EHELCC_06230 100.0 Morganella morganii S2 cybB cytochrome b561
NLDBIP_06550 NLDBIP_06550 100.0 Morganella morganii S4 cybB cytochrome b561
LHKJJB_03430 LHKJJB_03430 100.0 Morganella morganii S3 cybB cytochrome b561
HKOGLL_06905 HKOGLL_06905 100.0 Morganella morganii S5 cybB cytochrome b561
F4V73_RS16080 F4V73_RS16080 88.7 Morganella psychrotolerans cybB cytochrome b561

Distribution of the homologs in the orthogroup group_2676

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2676

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9X6B2 1.38e-46 153 45 0 174 3 cybB Probable superoxide oxidase CybB Yersinia pestis
P0ABE6 2.12e-40 137 52 0 174 3 cybB Superoxide oxidase CybB Shigella flexneri
P0ABE5 2.12e-40 137 52 0 174 1 cybB Superoxide oxidase CybB Escherichia coli (strain K12)
P76345 1e-37 130 37 1 175 1 yodB Cytochrome b561 homolog 1 Escherichia coli (strain K12)
P75925 2.6e-06 48 26 1 134 1 yceJ Cytochrome b561 homolog 2 Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S1
Locus tag FBDBKF_04940
Feature type CDS
Gene cybB
Product cytochrome b561
Location 194137 - 194670 (strand: 1)
Length 534 (nucleotides) / 177 (amino acids)

Contig

Accession contig_4
Length 199551 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2676
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF01292 Prokaryotic cytochrome b561

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3038 Energy production and conversion (C) C Cytochrome b561

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K12262 superoxide oxidase [EC:1.10.3.17] - -

Protein Sequence

MKTQKFQPVQIALHWFIFLLVIVVYISALLRDNADEPLRSILAGLHYSCGIAVGMLMIVRLAVRIKHRAPAIIPKPSPMITGLSHLVHLIIFVIFILLPVLGFSIKYLNGYDWSLFGIPMPVSAEPDEDLAYSIQNIHEIIANTGYFIIGLHAAAALAHHYFWKDNTLLRMMPRKRD

Flanking regions ( +/- flanking 50bp)

CCAGAGCACTGCCTCTGGTTTTTTTATCCGTATAATAAGAGCCGCAAAAAATGAAAACACAAAAATTTCAGCCTGTGCAGATTGCCCTGCACTGGTTTATTTTCCTGCTTGTGATTGTCGTTTATATCAGCGCCCTGTTACGGGACAATGCTGACGAACCACTGAGAAGTATTTTGGCCGGGCTGCATTACAGTTGCGGTATCGCTGTCGGTATGCTGATGATTGTCCGGCTGGCCGTCAGAATAAAGCACCGCGCACCGGCTATTATTCCTAAACCGTCACCGATGATAACCGGTTTATCCCATCTGGTGCACCTGATAATCTTTGTGATATTCATTCTGCTACCGGTGCTTGGTTTCAGTATTAAATATCTGAACGGTTATGACTGGTCGTTATTCGGTATCCCGATGCCGGTTTCCGCCGAGCCGGATGAAGATCTCGCGTACAGCATACAGAATATTCATGAGATCATTGCCAATACCGGTTATTTTATTATCGGCCTGCATGCCGCCGCCGCACTGGCACATCACTATTTCTGGAAAGATAATACCCTGCTGCGCATGATGCCGCGTAAACGGGACTGATTATCCGCCGCTGAATAACAAAACGCCCGGCAATCATGCCGGGCGTTTTT