Homologs in group_2222

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16985 FBDBKF_16985 96.7 Morganella morganii S1 rhaT carboxylate/amino acid/amine transporter
EHELCC_16605 EHELCC_16605 96.7 Morganella morganii S2 rhaT carboxylate/amino acid/amine transporter
NLDBIP_16815 NLDBIP_16815 96.7 Morganella morganii S4 rhaT carboxylate/amino acid/amine transporter
LHKJJB_16655 LHKJJB_16655 96.7 Morganella morganii S3 rhaT carboxylate/amino acid/amine transporter
HKOGLL_17620 HKOGLL_17620 96.7 Morganella morganii S5 rhaT carboxylate/amino acid/amine transporter
PMI_RS17530 PMI_RS17530 82.8 Proteus mirabilis HI4320 - carboxylate/amino acid/amine transporter

Distribution of the homologs in the orthogroup group_2222

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2222

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A1U2 5.03e-142 405 67 0 299 3 bioP Biotin transporter Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1U3 5.03e-142 405 67 0 299 3 bioP Biotin transporter Salmonella typhi
P0ADP5 6.19e-142 404 67 0 299 1 bioP Biotin transporter Escherichia coli (strain K12)
P0ADP6 6.19e-142 404 67 0 299 3 bioP Biotin transporter Escherichia coli O157:H7
O68826 9.58e-88 266 53 2 280 3 PA3474 Probable biotin transporter Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS18445
Feature type CDS
Gene -
Product carboxylate/amino acid/amine transporter
Location 23977 - 24876 (strand: -1)
Length 900 (nucleotides) / 299 (amino acids)

Contig

Accession term accessions NZ_VXKB01000009 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 74461 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2222
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00892 EamA-like transporter family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0697 Carbohydrate transport and metabolism (G)
Amino acid transport and metabolism (E)
General function prediction only (R)		 GER Permease of the drug/metabolite transporter (DMT) superfamily

Protein Sequence

MPLLIITTILWAASFSLIGEYLAGQVDSWFSVLVRVSLAAVIFLPFLRWRGIAPKVILLYMAVGACQLGIMYLFVFHAYNYLTVAEFLLFTVLTPLYVTLIYDLLERRGLRWGYVFSSLLAVIGAAVIRYDHLSDSFWKGLILVQLANIFFAVGQVGYKRLMEVHPLVQRTAFSWFYLGACVVALAGWLLFGNFAKMPSTQLQWGVLLWLGIGASGIGYFMWNYGATQVDAGTLAIMNNMMVPAGLLVNFAIWQQHPDWLTFSIGASLIVASLWVHRVWILKPSLQKADCPPRADAHNE

Flanking regions ( +/- flanking 50bp)

ATGATCTGGATTTACTGGAAGCCCTGCTTGTCGAGAAAGAAACATAACCGATGCCGTTACTGATTATTACCACCATTTTATGGGCCGCATCATTCAGCCTGATTGGCGAATATCTCGCCGGTCAGGTTGATAGTTGGTTCTCTGTATTAGTCCGTGTATCGCTGGCGGCAGTGATTTTCCTGCCGTTTCTGCGCTGGCGCGGCATTGCCCCGAAAGTCATTCTGCTCTATATGGCAGTGGGCGCATGTCAGCTCGGCATTATGTATCTGTTTGTTTTTCATGCCTATAACTATCTGACAGTCGCTGAATTTCTGCTGTTCACGGTACTGACTCCACTCTATGTGACGCTGATTTACGATCTGCTTGAGCGGCGCGGGCTGCGTTGGGGCTATGTGTTCAGCTCACTGCTGGCGGTGATTGGTGCGGCGGTTATCCGCTATGATCATCTCAGTGATTCATTCTGGAAAGGACTGATCCTGGTTCAGCTGGCGAATATTTTCTTTGCTGTCGGGCAGGTGGGGTATAAACGGCTGATGGAAGTTCATCCGCTGGTGCAGCGTACGGCATTTTCGTGGTTCTATCTCGGCGCGTGTGTGGTGGCGCTGGCGGGCTGGTTGCTGTTTGGGAATTTCGCCAAAATGCCGTCAACACAGTTACAGTGGGGTGTTCTGCTGTGGCTGGGGATCGGCGCATCCGGTATCGGTTACTTTATGTGGAACTACGGTGCCACTCAGGTTGACGCCGGAACTCTCGCTATCATGAATAACATGATGGTTCCGGCGGGGTTATTGGTTAACTTTGCCATATGGCAGCAGCATCCTGACTGGCTCACGTTCAGCATAGGTGCAAGCCTGATTGTTGCATCGCTGTGGGTACACCGGGTATGGATACTGAAGCCGTCTTTACAAAAGGCAGATTGTCCACCGCGTGCTGACGCGCACAACGAATAAATGACTCAATAGCCGGCTGGCGCTGTTCTCCGCTGCGGTTTGCGGCATAC