Homologs in group_2211

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16910 FBDBKF_16910 90.2 Morganella morganii S1 rfaH transcription/translation regulatory transformer protein RfaH
EHELCC_19520 EHELCC_19520 84.7 Morganella morganii S2 - hypothetical protein
NLDBIP_16890 NLDBIP_16890 90.2 Morganella morganii S4 rfaH transcription/translation regulatory transformer protein RfaH
LHKJJB_16580 LHKJJB_16580 90.2 Morganella morganii S3 rfaH transcription/translation regulatory transformer protein RfaH
HKOGLL_17545 HKOGLL_17545 90.2 Morganella morganii S5 rfaH transcription/translation regulatory transformer protein RfaH
PMI_RS17605 PMI_RS17605 63.2 Proteus mirabilis HI4320 rfaH transcription/translation regulatory transformer protein RfaH

Distribution of the homologs in the orthogroup group_2211

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2211

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8FBI4 6.5e-72 216 60 0 161 1 rfaH Transcription antitermination protein RfaH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TAL4 6.5e-72 216 60 0 161 1 rfaH Transcription antitermination protein RfaH Escherichia coli O6:K15:H31 (strain 536 / UPEC)
P0AFW0 1.1e-71 216 60 0 161 1 rfaH Transcription antitermination protein RfaH Escherichia coli (strain K12)
P0AFW1 1.1e-71 216 60 0 161 3 rfaH Transcription antitermination protein RfaH Escherichia coli O157:H7
Q1RHC5 3.2e-07 51 24 3 145 3 nusG Transcription termination/antitermination protein NusG Rickettsia bellii (strain RML369-C)
Q92J91 6.7e-06 47 24 2 148 3 nusG Transcription termination/antitermination protein NusG Rickettsia conorii (strain ATCC VR-613 / Malish 7)
P55976 1.32e-05 46 27 6 156 3 nusG Transcription termination/antitermination protein NusG Helicobacter pylori (strain ATCC 700392 / 26695)
Q4UKC9 2.43e-05 45 24 2 148 3 nusG Transcription termination/antitermination protein NusG Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q9ZK20 2.76e-05 45 27 6 156 3 nusG Transcription termination/antitermination protein NusG Helicobacter pylori (strain J99 / ATCC 700824)
Q68XN3 8.09e-05 44 22 2 148 3 nusG Transcription termination/antitermination protein NusG Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q9RSS6 0.000507 42 22 5 189 3 nusG Transcription termination/antitermination protein NusG Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS18380
Feature type CDS
Gene rfaH
Product transcription/translation regulatory transformer protein RfaH
Location 11226 - 11717 (strand: 1)
Length 492 (nucleotides) / 163 (amino acids)

Contig

Accession term accessions NZ_VXKB01000009 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 74461 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2211
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02357 Transcription termination factor nusG

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0250 Transcription (K) K Transcription termination/antitermination protein NusG

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05785 transcriptional antiterminator RfaH - -

Protein Sequence

MKDWYLLYCKRGQLPRAMEHLQRQQVECLTPMANIEKVVRGKRIIVNEPLFPNYLFISFEPEIIHTTTINSTRGVNHFVRFGTLPAVVPASLIDELKLAECINMSEQDVPQQGDIVEITEGMFKGLEAIYQEPDGETRSVLLLTLISKELTKKVDNTSFVKKD

Flanking regions ( +/- flanking 50bp)

TTTGTTATCATCTCAGCTATATATGTACACCATCTGTGTTGGATATGACAATGAAGGATTGGTATTTATTATACTGCAAACGCGGTCAGCTTCCGCGGGCAATGGAACATTTGCAGCGGCAACAGGTGGAATGTCTGACCCCTATGGCCAATATAGAAAAGGTAGTCCGGGGCAAGCGGATCATTGTGAATGAACCATTATTTCCGAATTATCTTTTTATCTCTTTTGAGCCGGAAATTATTCATACAACAACAATTAACTCAACTCGCGGTGTTAATCACTTTGTCCGGTTTGGTACATTACCGGCGGTTGTTCCTGCCTCATTAATTGATGAACTGAAACTTGCTGAATGCATCAATATGTCCGAGCAGGATGTTCCGCAACAGGGCGATATTGTTGAGATAACTGAAGGTATGTTCAAAGGGTTAGAGGCTATTTATCAGGAGCCTGACGGCGAAACCCGTTCTGTTCTTTTGCTGACGCTGATAAGTAAAGAGCTGACAAAAAAAGTGGATAATACCAGCTTTGTGAAGAAAGACTGATTTTACTGTCACTGCGGGCAGAAACAAAAAACCACCATGATGAATGGTGG