Homologs in group_222

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00405 FBDBKF_00405 61.3 Morganella morganii S1 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
EHELCC_01140 EHELCC_01140 61.3 Morganella morganii S2 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
NLDBIP_02320 NLDBIP_02320 61.3 Morganella morganii S4 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
LHKJJB_03835 LHKJJB_03835 61.3 Morganella morganii S3 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
HKOGLL_03210 HKOGLL_03210 61.3 Morganella morganii S5 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
F4V73_RS06385 F4V73_RS06385 61.0 Morganella psychrotolerans nrdB class Ia ribonucleoside-diphosphate reductase subunit beta
PMI_RS08515 PMI_RS08515 60.2 Proteus mirabilis HI4320 nrdB class Ia ribonucleoside-diphosphate reductase subunit beta

Distribution of the homologs in the orthogroup group_222

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_222

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P69924 6.75e-160 456 57 2 376 1 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Escherichia coli (strain K12)
P69925 6.75e-160 456 57 2 376 3 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Escherichia coli O157:H7
P37427 4.37e-159 454 58 3 377 3 nrdB Ribonucleoside-diphosphate reductase 1 subunit beta Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P43755 1.3e-158 453 58 2 376 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P57275 9.8e-152 435 54 2 376 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q89AS5 3.07e-149 429 53 2 375 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
Q8K9W4 9.51e-144 415 54 2 376 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P11156 1.3e-113 339 44 5 386 3 NRDB Ribonucleoside-diphosphate reductase subunit beta Enterobacteria phage T4
O83092 7.99e-27 112 24 7 344 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Treponema pallidum (strain Nichols)
Q9ZKC3 2.71e-23 102 22 5 310 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Helicobacter pylori (strain J99 / ATCC 700824)
Q9KFH7 8.59e-23 101 24 6 316 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P55983 4.3e-22 99 22 5 310 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Helicobacter pylori (strain ATCC 700392 / 26695)
Q9CBQ2 7.55e-21 95 25 10 327 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycobacterium leprae (strain TN)
P9WH71 1.22e-20 94 24 10 327 1 nrdF2 Ribonucleoside-diphosphate reductase subunit beta nrdF2 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WH70 1.22e-20 94 24 10 327 3 nrdF2 Ribonucleoside-diphosphate reductase subunit beta nrdF2 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P37146 3.54e-17 84 24 9 322 1 nrdF Ribonucleoside-diphosphate reductase 2 subunit beta Escherichia coli (strain K12)
P9WH73 8.37e-17 83 24 8 284 1 nrdF1 Ribonucleoside-diphosphate reductase subunit beta nrdF1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WH72 8.37e-17 83 24 8 284 3 nrdF1 Ribonucleoside-diphosphate reductase subunit beta nrdF1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q9Z6S4 8.95e-16 80 23 7 289 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia pneumoniae
Q9PL92 1.76e-15 80 24 11 291 3 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia muridarum (strain MoPn / Nigg)
P17424 3e-15 79 24 8 322 1 nrdF Ribonucleoside-diphosphate reductase 2 subunit beta Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P50621 5.36e-15 78 23 8 285 1 nrdF Ribonucleoside-diphosphate reductase subunit beta Bacillus subtilis (strain 168)
O84835 6.28e-15 78 23 9 291 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Chlamydia trachomatis serovar D (strain ATCC VR-885 / DSM 19411 / UW-3/Cx)
O67475 8.28e-13 73 25 7 248 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Aquifex aeolicus (strain VF5)
O67475 1.06e-08 60 26 3 125 1 nrdB Ribonucleoside-diphosphate reductase subunit beta Aquifex aeolicus (strain VF5)
O30601 2.02e-11 67 21 7 285 3 yosP SPbeta prophage-derived ribonucleoside-diphosphate reductase subunit beta Bacillus subtilis (strain 168)
O64174 2.02e-11 67 21 7 285 2 bnrdF Ribonucleoside-diphosphate reductase subunit beta Bacillus phage SPbeta
P42521 3.79e-11 67 21 11 335 2 rnrB-1 Ribonucleoside-diphosphate reductase small subunit Dictyostelium discoideum
Q197B2 6.68e-11 66 23 13 319 3 IIV3-048L Probable ribonucleoside-diphosphate reductase small subunit 048L Invertebrate iridescent virus 3
Q4R741 8.95e-11 66 23 8 290 2 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Macaca fascicularis
P49730 9.23e-11 65 21 9 327 2 None Ribonucleoside-diphosphate reductase small chain Nicotiana tabacum
Q5R9G0 1.12e-10 65 23 8 290 2 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Pongo abelii
Q7LG56 1.25e-10 65 23 8 290 1 RRM2B Ribonucleoside-diphosphate reductase subunit M2 B Homo sapiens
P20493 2.96e-10 64 25 8 290 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Copenhagen)
Q6PEE3 3.48e-10 64 22 8 290 1 Rrm2b Ribonucleoside-diphosphate reductase subunit M2 B Mus musculus
P0DSS8 4.08e-10 63 25 8 290 2 OPG048 Ribonucleoside-diphosphate reductase small chain Variola virus
Q4R7Q7 4.41e-10 64 24 9 290 2 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Macaca fascicularis
A0A7H0DN21 5.23e-10 63 24 7 289 3 OPG048 Ribonucleoside-diphosphate reductase small chain Monkeypox virus
P31350 6.87e-10 63 24 9 290 1 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Homo sapiens
P26713 6.97e-10 63 24 10 300 3 Mal-052 Ribonucleoside-diphosphate reductase small chain African swine fever virus (isolate Tick/Malawi/Lil 20-1/1983)
O57175 1.09e-09 62 24 6 289 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Ankara)
P11158 1.12e-09 62 24 6 289 1 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain Western Reserve)
Q9DHU2 1.27e-09 62 22 8 299 3 20L Ribonucleoside-diphosphate reductase small chain Yaba-like disease virus
P29883 2.12e-09 61 24 6 289 2 OPG048 Ribonucleoside-diphosphate reductase small chain Vaccinia virus (strain L-IVP)
P11157 3.1e-09 61 24 9 290 1 Rrm2 Ribonucleoside-diphosphate reductase subunit M2 Mus musculus
P50649 3.26e-09 61 21 7 314 3 RNR2 Ribonucleoside-diphosphate reductase small subunit Plasmodium falciparum (isolate FCR-3 / Gambia)
P42492 3.47e-09 61 23 10 300 2 Ba71V-044 Ribonucleoside-diphosphate reductase small chain African swine fever virus (strain Badajoz 1971 Vero-adapted)
P0C8I0 5.47e-09 60 23 10 300 3 Ken-056 Ribonucleoside-diphosphate reductase small chain African swine fever virus (isolate Pig/Kenya/KEN-50/1950)
P79733 5.86e-09 60 23 9 306 1 rrm2 Ribonucleoside-diphosphate reductase subunit M2 Danio rerio
P0C8I1 6.27e-09 60 23 10 300 3 Pret-056 Ribonucleoside-diphosphate reductase small chain African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996)
P0DSS7 7.68e-09 60 24 7 277 2 OPG048 Ribonucleoside-diphosphate reductase small chain Variola virus (isolate Human/India/Ind3/1967)
O15910 7.76e-09 60 25 12 279 2 RNR2 Ribonucleoside-diphosphate reductase small chain Trypanosoma brucei brucei
P0C8I2 8.17e-09 60 23 10 300 3 War-054 Ribonucleoside-diphosphate reductase small chain African swine fever virus (isolate Warthog/Namibia/Wart80/1980)
P50650 9.73e-09 60 21 7 312 2 RNR2 Ribonucleoside-diphosphate reductase small chain Plasmodium falciparum (isolate Dd2)
P50651 1.06e-08 59 20 7 326 1 RNR2A Ribonucleoside-diphosphate reductase small chain A Arabidopsis thaliana
Q9XC20 1.1e-08 59 22 8 280 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasmoides gallisepticum (strain R(low / passage 15 / clone 2))
P0DKH3 1.45e-08 59 21 7 292 2 RNR2B Ribonucleoside-diphosphate reductase small chain B Arabidopsis thaliana
P48592 1.79e-08 59 22 8 313 1 RnrS Ribonucleoside-diphosphate reductase subunit M2 Drosophila melanogaster
P09938 1.89e-08 59 22 9 336 1 RNR2 Ribonucleoside-diphosphate reductase small chain 1 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P42170 4.2e-08 58 21 9 333 3 rnr-2 Ribonucleoside-diphosphate reductase small chain Caenorhabditis elegans
P75461 4.92e-08 57 19 6 280 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q4KLN6 6.12e-08 57 23 9 290 2 Rrm2 Ribonucleoside-diphosphate reductase subunit M2 Rattus norvegicus
Q60561 1.04e-07 57 24 10 291 2 RRM2 Ribonucleoside-diphosphate reductase subunit M2 Mesocricetus auratus
Q9LSD0 1.49e-07 56 21 8 325 1 TSO2 Ribonucleoside-diphosphate reductase small chain C Arabidopsis thaliana
Q6R7K3 6.17e-07 55 23 14 338 3 ORF20 Ribonucleoside-diphosphate reductase small chain Ostreid herpesvirus 1 (isolate France)
Q91FE8 1.17e-06 53 21 9 314 3 IIV6-376L Probable ribonucleoside-diphosphate reductase small subunit 376L Invertebrate iridescent virus 6
Q9QTF2 2.16e-06 52 21 10 304 3 RR-2 Ribonucleoside-diphosphate reductase small chain Red sea bream iridovirus
Q8SRR2 4.1e-06 51 24 12 304 3 ECU06_0730 Ribonucleoside-diphosphate reductase small chain Encephalitozoon cuniculi (strain GB-M1)
P47471 1.83e-05 49 20 7 280 3 nrdF Ribonucleoside-diphosphate reductase subunit beta Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
P32209 2.71e-05 48 22 8 285 3 C14L Ribonucleoside-diphosphate reductase small chain Swinepox virus (strain Kasza)
Q7T6Y9 0.001 44 21 10 333 3 RNR2 Ribonucleoside-diphosphate reductase small chain Acanthamoeba polyphaga mimivirus

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS17905
Feature type CDS
Gene nrdB
Product class Ia ribonucleoside-diphosphate reductase subunit beta
Location 22425 - 23546 (strand: -1)
Length 1122 (nucleotides) / 373 (amino acids)

Contig

Accession term accessions NZ_VXKB01000008 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 103951 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_222
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00268 Ribonucleotide reductase, small chain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0208 Nucleotide transport and metabolism (F) F Ribonucleotide reductase beta subunit, ferritin-like domain

Kegg Ortholog Annotation(s)

Protein Sequence

MSGYSVFRQEKNDATKEPMFFGLSVNVARYDQQKHRIFEKAIERQLSFFWRPEEVDVSKDRIDYQNMPEHERHIFISNLKYQTLLDSVQGRAPNIALLPICSLPELETWIETWSFSETIHSRSYTHIIRNLVTDPDTIFDGIVEDEMILARAASVSEEYDRLIKMFVAREYLGVEKFEREFGDEAIQEQLFKTLVAVNTLEAIRFYVSFACTFAFGERGVMEANAKIMKFIARDEALHCHVTQEMIKLMYNGREGEMWKRIAERNRDFVIETMESVAEQEMAWADYLFKDGSMIGLNAEMLKEYVKHRSNVAMKRIGFEAVFPEVKHDPLPWMNNWLLSDNVQVAPQEAEKADYLTGQIDSEVKAGSLAGFEI

Flanking regions ( +/- flanking 50bp)

TGACTGATTCAGAATTGGCACAAACCAAACGTAAACGTAAAAGGAAATGTATGTCAGGCTATTCAGTATTTCGTCAGGAAAAGAATGATGCGACCAAAGAGCCGATGTTTTTCGGTCTGAGCGTAAATGTCGCCCGTTACGATCAGCAAAAGCACCGCATCTTTGAAAAAGCGATTGAACGGCAACTGAGCTTTTTCTGGCGCCCGGAAGAAGTGGATGTGAGCAAAGACCGCATCGATTACCAGAATATGCCGGAGCATGAGCGTCACATCTTTATTTCAAACCTGAAATACCAGACGCTGCTTGATTCTGTTCAGGGTCGTGCCCCTAATATCGCCCTGCTGCCTATTTGTTCACTGCCGGAGCTGGAAACGTGGATTGAAACGTGGTCTTTCTCCGAAACCATTCACAGCCGTAGCTACACCCATATTATCCGCAATCTTGTCACTGACCCGGACACTATTTTTGACGGCATTGTGGAAGATGAAATGATCCTCGCCCGTGCCGCGTCTGTATCGGAAGAATATGACCGTCTGATTAAAATGTTCGTCGCTCGTGAATATCTCGGTGTAGAGAAATTTGAGCGCGAATTCGGCGATGAAGCTATTCAGGAACAATTATTTAAAACGCTGGTGGCCGTCAACACCCTTGAGGCTATCCGCTTCTATGTCAGTTTCGCCTGTACTTTCGCGTTCGGTGAGCGTGGTGTGATGGAAGCGAACGCCAAGATCATGAAGTTTATTGCCCGTGATGAAGCGTTACATTGTCACGTTACGCAGGAAATGATTAAACTGATGTACAACGGGCGCGAGGGTGAAATGTGGAAACGCATTGCAGAGCGCAATCGTGACTTTGTTATTGAAACGATGGAATCCGTTGCCGAACAGGAAATGGCGTGGGCTGATTATCTGTTTAAAGACGGATCAATGATTGGCCTGAATGCAGAAATGCTGAAAGAGTACGTGAAACACCGCTCAAACGTGGCTATGAAGCGCATCGGGTTCGAGGCTGTGTTTCCGGAAGTAAAACACGATCCGTTGCCGTGGATGAACAACTGGTTGCTGTCTGACAACGTTCAGGTCGCTCCGCAGGAAGCGGAAAAAGCCGATTACCTCACCGGGCAGATTGACTCCGAAGTGAAAGCCGGTTCACTGGCTGGCTTTGAAATCTGATACACCTGCTGAAAAAGAGTGACTGCCGTAGTCACTCTTTCAATATTTAT