Homologs in group_346

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12050 FBDBKF_12050 37.1 Morganella morganii S1 spoT bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
EHELCC_14255 EHELCC_14255 37.1 Morganella morganii S2 spoT bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
NLDBIP_15350 NLDBIP_15350 37.1 Morganella morganii S4 spoT bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
LHKJJB_15260 LHKJJB_15260 37.1 Morganella morganii S3 spoT bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
HKOGLL_14380 HKOGLL_14380 37.1 Morganella morganii S5 spoT bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
F4V73_RS14595 F4V73_RS14595 35.4 Morganella psychrotolerans spoT bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
PMI_RS14155 PMI_RS14155 36.2 Proteus mirabilis HI4320 spoT bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase

Distribution of the homologs in the orthogroup group_346

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_346

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P29941 8.43e-22 93 40 2 154 4 None Uncharacterized 19.2 kDa protein in cobO 3'region Sinorhizobium sp.
O67012 4.25e-13 73 48 2 83 3 spoT Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase Aquifex aeolicus (strain VF5)
Q9D114 3.02e-12 67 35 4 133 1 Hddc3 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 Mus musculus
Q8N4P3 3.57e-12 67 37 4 127 1 HDDC3 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 Homo sapiens
P74007 1.15e-11 68 37 7 137 3 spoT Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q49640 3.36e-11 67 41 2 86 3 relA Probable GTP pyrophosphokinase Mycobacterium leprae (strain TN)
P66015 4.42e-11 67 40 2 86 3 relA Probable GTP pyrophosphokinase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WHG9 4.57e-11 67 40 2 86 1 relA Bifunctional (p)ppGpp synthase/hydrolase RelA Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WHG8 4.57e-11 67 40 2 86 3 relA Bifunctional (p)ppGpp synthase/hydrolase RelA Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P52560 5.33e-11 66 38 7 134 3 relA GTP pyrophosphokinase Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
O52177 5.79e-11 66 32 6 152 3 relA GTP pyrophosphokinase Myxococcus xanthus
Q28C98 7.91e-11 63 35 4 133 2 hddc3 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 Xenopus tropicalis
O87331 1.09e-10 65 41 2 86 3 relA GTP pyrophosphokinase Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
Q54089 1.51e-10 65 35 7 140 1 relA Bifunctional (p)ppGpp synthase/hydrolase RelA Streptococcus dysgalactiae subsp. equisimilis
O51216 2.54e-10 64 34 5 133 3 spoT Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)
O85709 2.9e-10 64 38 7 134 3 relA GTP pyrophosphokinase Streptomyces antibioticus
O54408 4.38e-10 63 38 6 134 1 relA GTP pyrophosphokinase Bacillus subtilis (strain 168)
P0AG26 4.81e-10 63 39 7 138 3 spoT Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase Shigella flexneri
P0AG24 4.81e-10 63 39 7 138 1 spoT Bifunctional (p)ppGpp synthase/hydrolase SpoT Escherichia coli (strain K12)
P0AG25 4.81e-10 63 39 7 138 3 spoT Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase Escherichia coli O157:H7
O34098 8.81e-10 63 32 5 132 3 spoT Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase Spiroplasma citri
P43811 1.32e-09 62 43 3 90 3 spoT Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9KNM2 1.75e-09 62 36 6 136 1 spoT Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P75386 3.27e-09 61 30 5 139 3 spoT Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q9VAM9 3.34e-09 58 36 4 126 1 Mesh1 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 Drosophila melanogaster
Q8CY42 1.19e-08 59 34 6 135 1 rsh GTP pyrophosphokinase rsh Brucella suis biovar 1 (strain 1330)
A5VPI9 1.22e-08 59 41 3 86 3 rsh GTP pyrophosphokinase rsh Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512)
Q57E90 1.28e-08 59 41 3 86 1 rsh GTP pyrophosphokinase rsh Brucella abortus biovar 1 (strain 9-941)
Q2YN11 1.28e-08 59 41 3 86 3 rsh GTP pyrophosphokinase rsh Brucella abortus (strain 2308)
P0DKG8 1.35e-08 59 39 3 94 1 RSH1 Putative GTP diphosphokinase RSH1, chloroplastic Arabidopsis thaliana
F4JHA2 1.36e-08 59 39 3 94 1 RSH1 Putative GTP diphosphokinase RSH1, chloroplastic Arabidopsis thaliana
Q931Q4 2.38e-08 58 34 5 129 1 relA GTP pyrophosphokinase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q8CS97 2.48e-08 58 33 5 129 3 relA GTP pyrophosphokinase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HNR8 2.48e-08 58 33 5 129 3 relA GTP pyrophosphokinase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q8YG65 2.48e-08 58 41 3 86 1 rsh GTP pyrophosphokinase rsh Brucella melitensis biotype 1 (strain ATCC 23456 / CCUG 17765 / NCTC 10094 / 16M)
P0A0E9 2.51e-08 58 34 5 129 3 relA GTP pyrophosphokinase Staphylococcus aureus (strain MW2)
P0A0F0 2.51e-08 58 34 5 129 3 relA GTP pyrophosphokinase Staphylococcus aureus
Q6G8T5 2.51e-08 58 34 5 129 3 relA GTP pyrophosphokinase Staphylococcus aureus (strain MSSA476)
Q99TL8 2.51e-08 58 34 5 129 1 relA GTP pyrophosphokinase Staphylococcus aureus (strain N315)
Q6GG70 2.6e-08 58 34 5 129 3 relA GTP pyrophosphokinase Staphylococcus aureus (strain MRSA252)
Q568P1 3.36e-08 55 34 4 127 2 hddc3 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 Danio rerio
P47520 1.38e-07 56 29 5 137 3 spoT Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)
Q9M5P5 4.82e-07 54 28 3 124 2 RSH3 Probable GTP diphosphokinase RSH3, chloroplastic Arabidopsis thaliana
Q9AYT5 1.69e-06 53 39 3 87 2 RSH1 Putative GTP diphosphokinase RSH1, chloroplastic Oryza sativa subsp. japonica
Q9M5P6 5.97e-06 51 30 5 135 2 RSH2 Probable GTP diphosphokinase RSH2, chloroplastic Arabidopsis thaliana
Q9SYH1 7.69e-06 50 29 5 135 2 RSH3 Probable GTP diphosphokinase RSH3, chloroplastic Arabidopsis thaliana
Q9LVJ3 1.04e-05 50 29 5 135 2 RSH2 Probable GTP diphosphokinase RSH2, chloroplastic Arabidopsis thaliana
Q7XAP4 3.07e-05 48 28 4 135 2 RSH2 Probable GTP diphosphokinase RSH2, chloroplastic Oryza sativa subsp. japonica
Q67UU0 6.57e-05 48 33 2 90 2 RSH3 Probable GTP diphosphokinase RSH3, chloroplastic Oryza sativa subsp. japonica

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS17820
Feature type CDS
Gene -
Product HD domain-containing protein
Location 10399 - 11307 (strand: -1)
Length 909 (nucleotides) / 302 (amino acids)

Contig

Accession term accessions NZ_VXKB01000008 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 103951 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_346
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF13328 HD domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0317 Signal transduction mechanisms (T)
Transcription (K)		 TK (p)ppGpp synthase/hydrolase, HD superfamily

Protein Sequence

MIDLIKKSRDFAEKAHAGQKRKYTGEDYITHPVHVAQIVGGFAGSTQEMTIAALLHDVVEDTGVTLSEIRLNFGDEVAELVHCLTNIRFTEKQKESVFSRPRRYGMNAAKIFFQDNRAANTIKIADMMSNLSNVFDHDRKYGTRYLAEKTYLCDNIISRNCNPAAVHEFYALASLLYDDLNQDEKTRYGMHYNTLDNATKDEILRRDPMVTVSYSAAVGLKPAEPVFKSAKDLQPNDVINIIGGWYRVRYINYRPYEISVQLQRKEHELSPLLDQTCMTLSVDRNLNVLFPVEVSNESKDTV

Flanking regions ( +/- flanking 50bp)

CTCGCCAGCACTGTCATCATATCCATATCGAAAAATGAAAGAGAAATCCCATGATAGACCTGATTAAGAAGTCGCGTGACTTTGCAGAAAAAGCACATGCCGGCCAAAAGCGGAAGTACACCGGTGAGGATTACATCACCCACCCTGTTCATGTGGCGCAGATCGTCGGTGGTTTCGCCGGCTCGACGCAGGAAATGACAATTGCCGCTTTACTGCATGATGTGGTTGAGGACACTGGTGTAACACTGAGTGAGATCCGTCTGAATTTCGGCGATGAGGTGGCAGAGCTGGTTCACTGCCTTACCAATATCCGTTTTACCGAAAAACAGAAAGAATCAGTATTTAGCCGCCCGCGACGTTACGGTATGAACGCGGCGAAGATTTTCTTTCAGGATAACCGCGCTGCAAACACGATTAAAATCGCAGATATGATGAGCAACCTCAGCAATGTCTTTGATCATGACCGGAAGTACGGTACACGGTATCTGGCTGAGAAAACATATCTGTGCGACAACATTATCAGCCGAAACTGCAATCCTGCTGCTGTTCACGAGTTTTACGCTCTGGCTTCCCTGCTTTACGACGATTTAAATCAGGACGAAAAGACCCGTTACGGAATGCACTACAACACTCTCGATAACGCGACCAAAGATGAAATCCTTCGCCGCGACCCGATGGTTACTGTTTCATACTCTGCTGCTGTTGGCTTGAAGCCGGCAGAGCCAGTCTTTAAATCAGCAAAAGACCTGCAACCGAATGATGTGATCAACATTATTGGCGGCTGGTATCGCGTTCGTTATATCAATTACAGACCATACGAAATTTCGGTACAGCTACAGCGTAAAGAGCATGAACTGTCGCCGTTACTGGATCAGACCTGCATGACTCTTTCGGTTGACCGTAATCTGAATGTTCTTTTCCCTGTTGAGGTTAGCAATGAAAGTAAAGACACCGTTTAACCCCAGCAAACGCGCCGAATGCCGTGTGAAAGATCCGGTTCCGGCTCCGA